Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00426 ATGGATGTAAGCTGGCCATGGCCTACTCCCACATCTTCTCCTACTTTACCTCTCATGAAGAATGTTTGTTGGCCATACTTTGATCCTGATTTTGATACTCTTCCTGAGAGGATAAATGGCCCAACGGTCTGCATTGACAATGAAAGCATGGAGGATTGCACCATTGTCAAGGCCATTGGAACAACCAAAGGACCTGATAACTCGTCCAAAACCAGACGCTATGTTAACAAATTTCTGAATGCTGATAACTCCGGCGAACATACGGCAATTGAAATGACCGGTACCGACCGGCCCGGTCTCTTCTCTGAGATATCTGCTGCATTGGCTGACCTCCATTGCAACGTTGTGGAAGCTCATGCTTGGAGCCATAATGCTCGTTTGGCCTGCATTGCTTACATTTCGGACCAATCTACAGATAGTCCTATTGAGGACCCCCACCGGCTCGCCAACATTGAGGAGCATCTTTCCACTGTTCTCAGGGCGGCGACTGCTCCACCAATTGCCAGTTGGACTCATACCCTGCAACAAGAAGTGAAAATATCAGCCACAATAACAACCAATGTGGAGCGGCGGCTACACCAACTCTTGGTCTCAGTTAAGGATTATGATTGGACCTCTGAATCCATTTCAAAGAGACCTAAAAGAAATGAAGACTGGAGGAAGACAATGGTGAGCATTGAAAGCTGTGATCAGAAAGGATACTCAATTGTCAGCATCGAGTGCAAGGATCGGCCGAGGCTTATGTTTGACACAGTTTGTACTCTTACTGATATGCAATATGTAATCTTTCATGCTTCCATTAGCTCCAAGAAAGATAATGCTTTTCAGGAGTACTTTATCAGACATGTGAATGGGTACGCCTTGAATTCAGACTATGACAAGCACAGGGTGGTAAAATGCTTAGAGGCAGCCATTGAACGTCGTGTTTGCGAGGGAGTGAGGCTGGAGTTATGTGCAAACAACAGGGTGGGATTGCTATCAGACATAACAAGGGTTCTGCGGGAAAATGGGCTGAATGTGGTGAGAGCAGACATAGCAACACAAGGAGAGAAGGCCATTAATGCATTTTATGTCAAAGACATTTCAGGCAAAGAAGTAGATATGGAGATGGTAGAGTCGGTGAAGAAAGAAATTGGCCCTGTTGTACTTCGAGTCAAGAATGAGACAAGCCCTCCATCAACGCCTCAAATTACCAGGTCTCGTTTCTCCTTCAGCGACATGCTCAAGTCTCAGCTCGAGCGACTCTCTCACAACTTCATTGCTATCAGACATTGA 1275 45.8 MDVSWPWPTPTSSPTLPLMKNVCWPYFDPDFDTLPERINGPTVCIDNESMEDCTIVKAIGTTKGPDNSSKTRRYVNKFLNADNSGEHTAIEMTGTDRPGLFSEISAALADLHCNVVEAHAWSHNARLACIAYISDQSTDSPIEDPHRLANIEEHLSTVLRAATAPPIASWTHTLQQEVKISATITTNVERRLHQLLVSVKDYDWTSESISKRPKRNEDWRKTMVSIESCDQKGYSIVSIECKDRPRLMFDTVCTLTDMQYVIFHASISSKKDNAFQEYFIRHVNGYALNSDYDKHRVVKCLEAAIERRVCEGVRLELCANNRVGLLSDITRVLRENGLNVVRADIATQGEKAINAFYVKDISGKEVDMEMVESVKKEIGPVVLRVKNETSPPSTPQITRSRFSFSDMLKSQLERLSHNFIAIRH 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3369336 3372144 + MELO3C003714.2.1 Cme04g00426 324687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00426 424 CDD ACT_ACR_3 234 308 - -
Cme04g00426 424 CDD ACT_ACR_4 312 383 - -
Cme04g00426 424 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 20 58 - -
Cme04g00426 424 ProSiteProfiles ACT domain profile. 89 169 IPR002912 -
Cme04g00426 424 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 57 421 - -
Cme04g00426 424 Pfam ACT domain 314 360 IPR002912 -
Cme04g00426 424 Pfam ACT domain 89 156 IPR002912 -
Cme04g00426 424 Gene3D - 85 163 - -
Cme04g00426 424 SUPERFAMILY ACT-like 312 381 IPR045865 -
Cme04g00426 424 SUPERFAMILY ACT-like 85 159 IPR045865 -
Cme04g00426 424 CDD ACT_ACR_2 88 161 - -
Cme04g00426 424 Gene3D - 313 388 - -
Cme04g00426 424 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 20 58 IPR040217 -
Cme04g00426 424 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 57 421 IPR040217 -
Cme04g00426 424 ProSiteProfiles ACT domain profile. 314 392 IPR002912 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00426 - - - csv:101219701 723.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00426 Cme-Chr4:3369336 Cme07g01921 Cme-Chr7:24424930 9.74E-07 dispersed
Cme04g00426 Cme-Chr4:3369336 Cme06g02643 Cme-Chr6:33588844 4.55E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g502 . Blo12g01071 . Bda03g00076 . . Bma04g00073 . . . Cma01g01514 . . . . . . . . . . . . . Cla05g01724 Cam05g1837 Cec05g1851 Cco05g1908 Clacu05g1824 Cmu05g1708 Cre05g1839 Cone4ag1777 . . . Lsi04g02116 Csa03g04320 Chy04g00380 . . . . . . Bpe04g00062 . . Sed13g2012 Cmo01g01567 . . . . . . Cpe02g00442 Bhi09g02223 Tan01g3625 Cmetu04g2629 . Hepe01g2008 Mch11g0544 . . . . . . . . . . . Cme04g00426
Vvi18g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0807 Cone20ag0412 . Csa03g04320 Chy04g00380 . Blo17g00230 . . Bda13g01544 . Bpe14g00321 . Bma02g00288 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011487 0 2 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00426 Cme_Chr04 FPKM 6.560577 7.279409 7.482161 8.132733 16.811106 16.503315 19.331936 11.691818 10.803923 11.769744