Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00428 ATGTCGTTCTTCTCCGGTATCTTCATCGGCGTTGTTGTTGGAGTCCTGCTTATTATCGCTCTTGCTCGCGTCGGGAATGTTCGCGCCAAACATCGCTCCGATTTGGCTACGACTATTGCGGCATTTGCTAGGATGACAGCGCAGGATTCGAGGAAAATTCTTCCCAAGGAATTTTACCCGTCGTGGGTTGTATTTACGCAGCGACAGAAGATTAGAAGATCTCAATTGATGCTACTGTCTGGACGTGGAGAAGGATTGATTTCAGGATTTCGAGTTTTAACTTGGCTTAATCTTCAGCTTGATAAAATCTGGCCATATGTTGATGCGGCAGCATCAGAGCTGATAAGGAGCAATGTGGAGCCGGTTCTAGAACAATTTCGACCGATGATATTATCTTCTTTGAAATTCTCAAAGTTGACCTTGGGTTCTGTCGCTCCAAATCTTACAGGAATTGCTGTACTTGAAGATGAGTCAGATACCAATGGAATAACTTTGGAGTTGGAGATGCAATGGGATGGTAATCCAAACATTGTTCTTGACATCAAAACTAAACTCGGCGTTTCTTTACCAGTACAGGTAAAAGATGTTGCATTCACAGGGCTTTTCAGATTAATGTTCAAGCCATTGGTTGATGAGTTTCCTTGCTTTGGAGCAGTGTGTTATTCTCTAAGGAAAAAGATTATTGGAGGAGACATATCATCAATTCCTGGGGTTTCTGATGCTATTGAGGAAACAATCAGAGATGCTATTGAAGGTACTATAACGTGGCCAGTTCGGCAGATTGTGCCCATCCTAGCAGGAGATTACAGCGATCTAGAGGTGAAACCTGTTGGAACATTAGAAGTGAAGCTCGTGCAGGCAAAGGAATTAACCAATAAAGACATTATAGGAAAGTCGGATCCTTATGCTGTGCTGTTTGTACGGCCATTGAAAGAGAGAATGAAAACAAGTAAAACCATTAATAATCAATTGAATCCCATATGGAACGAGCACTTTGATTTTATTGTTGAAGATGCATCTACTCAGCACTTGACTATAAGAGTTTTCGACGATGAAGGAGTTCAGGCCTCTGAACTAATTGGCTGTGCTCAAGTAGCATTAAAGGATCTCGAGCCCGGTAAAGTGAAGGATGTTTGGTTGAAGCTGGTCAAAGATTTGGAGATACAAAGAGATAACAAATACAGGGGTCAGGTGCATTTGGAGCTTCTTTACTATCCATTTGGCACTGATCAGAGCCTCTACATAAACCCATTTAACCCAGATTATGCATTGACCTCAGTGGAGAAGGCTCTAAAGATGGCTCCGAATGGTTCCGAAGATGCAGATTCTGGAAAACAAAGCTCCCCGAAGAAGAGGGATACGATTGTAAGAGGAGTGCTATCTGTAACAGTAATAGCTGCTGAAGATTTGCCTGCTGTAGATTTCATGGGGAAAGCCGACCCTTACGTTGTTCTCACTATGAAGAAATCCGAGACCAAAGTTAAAACCAGGCTCACCATTGGATGGTTTCGCCAGGTTGTACATGACACCGTGAATCCTGTCTGGAATCAAACGTTCGACTTTCTGGTGGAGGATGCATTACATGATATGCTGATGATAGAGGTCTGGGATCATGACACTTTTGGAAAGGATAAACTGGGGAGGGTCATAATGACGTTGACCAGAGCAATATTGGAAGGGGAAATTCAGGATAGTTTTCCATTGGAAGGAGCCAAATCAGGACGGATTTTTCTTCATCTCAAGTGGGCAGCTCAGCCAATATTCCGAGATACTTAG 1776 42.91 MSFFSGIFIGVVVGVLLIIALARVGNVRAKHRSDLATTIAAFARMTAQDSRKILPKEFYPSWVVFTQRQKIRRSQLMLLSGRGEGLISGFRVLTWLNLQLDKIWPYVDAAASELIRSNVEPVLEQFRPMILSSLKFSKLTLGSVAPNLTGIAVLEDESDTNGITLELEMQWDGNPNIVLDIKTKLGVSLPVQVKDVAFTGLFRLMFKPLVDEFPCFGAVCYSLRKKIIGGDISSIPGVSDAIEETIRDAIEGTITWPVRQIVPILAGDYSDLEVKPVGTLEVKLVQAKELTNKDIIGKSDPYAVLFVRPLKERMKTSKTINNQLNPIWNEHFDFIVEDASTQHLTIRVFDDEGVQASELIGCAQVALKDLEPGKVKDVWLKLVKDLEIQRDNKYRGQVHLELLYYPFGTDQSLYINPFNPDYALTSVEKALKMAPNGSEDADSGKQSSPKKRDTIVRGVLSVTVIAAEDLPAVDFMGKADPYVVLTMKKSETKVKTRLTIGWFRQVVHDTVNPVWNQTFDFLVEDALHDMLMIEVWDHDTFGKDKLGRVIMTLTRAILEGEIQDSFPLEGAKSGRIFLHLKWAAQPIFRDT 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3376654 3381370 - MELO3C003716.2.1 Cme04g00428 324689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00428 591 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 590 IPR045050 GO:0008289
Cme04g00428 591 ProSiteProfiles C2 domain profile. 441 566 IPR000008 -
Cme04g00428 591 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 94 264 IPR039010 -
Cme04g00428 591 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 455 582 IPR035892 -
Cme04g00428 591 ProSiteProfiles C2 domain profile. 259 380 IPR000008 -
Cme04g00428 591 SMART C2_3c 459 565 IPR000008 -
Cme04g00428 591 SMART C2_3c 279 379 IPR000008 -
Cme04g00428 591 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 276 407 IPR035892 -
Cme04g00428 591 PANTHER SYNAPTOTAGMIN-4 1 590 - -
Cme04g00428 591 CDD C2 280 382 - -
Cme04g00428 591 CDD C2 460 568 - -
Cme04g00428 591 Pfam C2 domain 278 382 IPR000008 -
Cme04g00428 591 Pfam C2 domain 458 567 IPR000008 -
Cme04g00428 591 Gene3D C2 domain 442 584 IPR035892 -
Cme04g00428 591 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 88 265 IPR031468 GO:0008289
Cme04g00428 591 Gene3D C2 domain 274 414 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00428 - - - csv:101210249 1018.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01738 Cme-Chr2:24364212 Cme04g00428 Cme-Chr4:3376654 1.14E-07 dispersed
Cme04g00428 Cme-Chr4:3376654 Cme05g01883 Cme-Chr5:27600762 0 dispersed
Cme07g00589 Cme-Chr7:5105647 Cme04g00428 Cme-Chr4:3376654 4.14E-16 dispersed
Cme04g00428 Cme-Chr4:3376654 Cme03g01869 Cme-Chr3:26921041 1.75E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00428 Cme_Chr04 FPKM 11.370635 12.531821 0.734696 0.46596 12.674278 13.786475 13.082996 0.098313 0.0 0.0