Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00449 ATGGGGAAGGCTACCGATTTTTCGTCTAATCGTCGTTCGCCAAGTGGAACTAGTTTCACCGGCGATAATACCAACAGCTCTGAGTTCCGGAGGAAGAATCTTCAGTCTCCATGGGCTCAAGTCGTCCGCGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTATCGTCCTCTTCGTCATCCTTGTCTTCTCTTGCGGTTTCGGCTACAGAAACCCCTGCTCCTGCCTCGCCACCGTCGGATAACTTTACGTCTTCCGAGAACTGCGACACAAATGACGGTAATGCAACGGCTGCGTCGAAGAAACAGGCTTGGAACAAGCCTACGAATGGTGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAATCCGCGAGGGCTTCACCCAAATTAACAGTTGATTCTCCTCCGAAGGTTACCGTCGAAGTAGCAGTCCCCCCTTCTCAGGGACCTATCAACGTACCTCCTCAACGACAAGCTACAAATAATGCCAAATCGAACCCGACTCTGAAGAATCCAGTGGTTCCTCGGCTAAGATCCTCAAGGCGGGGTGGTGGTGGTGGTGGCAGCTCAGTGGGAGGGCCTGCACGAGGTGGCTTTTATCGCCCTCCGCCACCTCCACCACCACCACCTCCTCCTCCCCCTTTTCCTCTATTTCAAGTTCCTCCAAATAGTTATTGTAATATGATACCGGCAATTCCTGATCCTTCTTCAGGAGAACCACCGTTCAGGAGCCTGAACCCTAATTGGGATCCGCGGGCTGTTGCAGGCTTTGTGCCTCAATTAAATTTTGGTACTGATCACCGAAACTTCTTTCCTAGGGGGCATTTAGCTTTCCATCCCCGTGTTGATGGTCACTACCATAACAATCGTGGAGGAAAACGTGGTCAAGACCGTGGAATATATCCTAATGCTCGAGATGCTCATTTCCAGCAGCACAGGCCTCATACTAGAGGATTTATGAGGCCTTTGCCACCTTTCGCTGGTCAGTTTCCTCAGGGTGTTAGGCCTCATGTGAATCCTATGGCTCATCCAGAGTTTGTCTATGTCCCTACATTGCCCTTGGAGGCTTACAGAGGCAGCATGCCTTTCATGCCACGACCAGCAATGAACTATCCTACTATTACTGAGTATAACTGTGCATTCCTGTCTATGCTATCCGCAGTGATGGTCCCAGATGGACGATCAAGGCTGGGTGCCAATTTCTCTGATAGCTACCTTTCCTATGATTATGCTAGAGTGAGATACTTTAAAGTCATTGTGATCATTCCAGTCCTGAGTTTGACAAACAATATTCAATGGATCATAGAATCCTTGAGAGCGTCTACTGAAGTGGAAGTTCAGGATAATAAGATCAGACGGAGAAATGAGTGGAAGAAATGGACAACTAAATCCAATTGGTTTAGAACCGATTTGGTCTCTTCTGCAACAAGTGGATCGAGTCATGATAGTCTAGCAACTTCTTTTCAAAGGGTCAGAGTGGATGAAGGTACGAACCAAAGTATGACCAATGATAATGATCCTCACAACGCCGAGCGTACTACTGAGTTGCAATCTTCCGAGTCAGGTGATTGTTCAAAACTTACTAATGGTGAGGCGAATCAGGATGTTCAGACTGATATCTGA 1650 48.61 MGKATDFSSNRRSPSGTSFTGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDTNDGNATAASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKNPVVPRLRSSRRGGGGGGSSVGGPARGGFYRPPPPPPPPPPPPPFPLFQVPPNSYCNMIPAIPDPSSGEPPFRSLNPNWDPRAVAGFVPQLNFGTDHRNFFPRGHLAFHPRVDGHYHNNRGGKRGQDRGIYPNARDAHFQQHRPHTRGFMRPLPPFAGQFPQGVRPHVNPMAHPEFVYVPTLPLEAYRGSMPFMPRPAMNYPTITEYNCAFLSMLSAVMVPDGRSRLGANFSDSYLSYDYARVRYFKVIVIIPVLSLTNNIQWIIESLRASTEVEVQDNKIRRRNEWKKWTTKSNWFRTDLVSSATSGSSHDSLATSFQRVRVDEGTNQSMTNDNDPHNAERTTELQSSESGDCSKLTNGEANQDVQTDI 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3571633 3576714 + MELO3C003736.2.1 Cme04g00449 324710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00449 549 PANTHER LUPUS LA PROTEIN-RELATED 433 528 IPR045180 -
Cme04g00449 549 PANTHER LUPUS LA PROTEIN-RELATED 37 368 IPR045180 -
Cme04g00449 549 MobiDBLite consensus disorder prediction 499 549 - -
Cme04g00449 549 PANTHER LA-RELATED PROTEIN 1B 37 368 - -
Cme04g00449 549 MobiDBLite consensus disorder prediction 162 182 - -
Cme04g00449 549 MobiDBLite consensus disorder prediction 499 516 - -
Cme04g00449 549 PANTHER LA-RELATED PROTEIN 1B 433 528 - -
Cme04g00449 549 MobiDBLite consensus disorder prediction 207 226 - -
Cme04g00449 549 MobiDBLite consensus disorder prediction 49 109 - -
Cme04g00449 549 MobiDBLite consensus disorder prediction 1 226 - -
Cme04g00449 549 MobiDBLite consensus disorder prediction 1 34 - -
Cme04g00449 549 MobiDBLite consensus disorder prediction 523 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00449 K18757 LARP1; la-related protein 1 - csv:101220887 841.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00449 Cme-Chr4:3571633 Cme08g00957 Cme-Chr8:6301324 1.22E-10 dispersed
Cme04g00449 Cme-Chr4:3571633 Cme08g00956 Cme-Chr8:6289348 9.23E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00449 Cme_Chr04 FPKM 21.642057 25.244757 25.517153 26.491375 21.0117 26.579205 24.59136 38.363598 39.245296 35.652287