Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00458 ATGAAGAGAAGACCCATTGATCCTTTTGTTTCCCGTTTAGGTTCCTTCTTCATATTCCTTTTCTTTGCTAGTTTATGCTTTGCCAATCGCGATATGGAAGCGCTGTTAAAGATGAAAAGTTCAATGATCGGACCGGGGAGGTCGGAGCTTGGTGATTGGGAGCCGTCGCCTTCGTCGTCTCCGTCTGCTCATTGTGATTTCTCTGGTGTTACTTGCGATGGTGATAATAGAGTTGTTGCGCTTAACGTCTCGAATCTCCGTTTATTTGGCTCCATTCCGCCGGAGATTGGAATGTTGGATAAGATTGAGAACCTGACTTTAGTGAGCAACAATCTAACTGGAAAGCTTCCTCTTGAGATGGCGAAACTCACGTCCCTTAAGTTTCTTAACCTATCTAACAATGCATTTCGTGATAATTTAACGGCTGAAATCACGGTAGGAATGACCGAACTGGAGGTTTTTGATATCTATAACAATAATTTCTTCGGTCTGCTTCCGGTGGAATTTGTTAAATTGAAGAAGCTCAAGCATCTTGACCTTGGCGGTTGCTACTTTACTGGTCAAATTCCTGCTGTTTACTCGGAAATGCAGTCGTTGGAGTTCTTGAGCGTTCGGGGAAACATGCTTACCGGAAGGATTCCGGCGAGTTTGGGGAGGTTGAAGAATCTTAGATATCTGTACGCCGGATACTTTAATCATTACGACGGAGGTATTCCTCCAGAGTTTGGATCCTTGAGTTCCCTGGAGCTTATCGATTTAGCTAACTGTAACCTCATCGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACTTGCATAGTCTATTTTTACAAGTAAACAATCTTACTGGTCGGATTCCGTCTGAACTTTCCGGACTGATTAGCCTCAAGTCATTGGACCTCTCGCTGAACGAACTCACCGGAGAGATACCGTCGAGTTTCGTTGCGCTGCAGAATCTTACGCTGATCAATTTGTTCAATAACAGACTTCATGGTCCAATTCCTGGTTTCGTTGGTGATTTTCCTCATCTCGAAGTGCTTCAGTTATGGAATAACAACTTCACGCTCCAGCTCCCCGAGAATCTCGGGCGTAATGGCAAGCTGTTTCTGCTCGATGTGGCGACGAATCATCTAACTGGCCTCATTCCTCAGGATTTATGTAACGGTAGGTTGAAGACTTTGATTCTTTTAGATAATTACTTCTTTGGGCCCATCCCTGAGAAATTAGGCCGGTGTGATTCGCTTACGAAAATAAGAATTGCGGGAAATTTCTTCAATGGAACGGTTCCGGCAGGGTTCTTCAACTTTCCGGCGTTGGAGCAACTCGACATCAGTAACAATTACTTCTCCGGTGCCCTTCCGTCGCAAATGTCAGGGGAGATTCTTGGAAGTCTACTGCTTAGTAACAACCATATAACCGGGGAAATCCCGGCGGCGATTAGGAATTTAGAGAACCTGCAGGTTGTTTCTCTGGAACATAACCAATTCACCGGGAATTTGCCTAAGGAAATATTTCAATTAAACAAGTTGCTGAGGATTAACATCAGTTTTAACAATATTAGCGGCGAAATTCCGGATTCGGTTGTTCAGTGCACTTCGTTAACGTTAGTTGATCTCAGCGAAAATTATCTCGTTGGCGTAATTCCCAGAGGAATTTCGAAGCTGAAAATCTTGAGCGTCCTCAATTTGTCTAGAAATCACTTGACAGGCCAAATTCCGAACGAGATGCGATCGATGATGAGTCTTACAACTCTTGATTTGTCTTACAACAATTTCTTCGGCAAAATCCCCACCGGCGGTCAGTTTTCTGTATTCAACGTCAGTGCATTCATCGGAAACCCTAATCTCTGCTTCCCCAACCATGGGCCATGCGCATCTTTACACAAGAATTTAAAATATGTTAAACTAATCATCCCACTCGTCGCGATATTCATCGTTCTTTTATGTGTACTCGCTGCACTTTATCTCCGGAAGAGAAAGAAGATTCAGAAATCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTCAACTTCAAAGCAGAGGACGTCCTAGAATGCTTGAAGGATGAAAATATCATCGGCAAAGGCGGAGCCGGAGTAGTCTATCGTGGATCAATGCCTGACGGCTCCGTCGTGGCTATTAAACTGCTATTAGGAAGCGGCCGGAACGACCACGGTTTCTCTGCTGAAATTCAGACTCTAGGACGAATCAAGCACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAGAGACACGAATCTGCTGCTGTACGAGTACATGCCTAATGGTAGCTTGGACCAGAGGCTGCATGGAGTGAAGGGCGGTCATTTGCATTGGGACTTGCGGTACAAGATTGCTATGGAAGCTGCTAAGGGACTCTGTTACTTGCACCATGATTGTACGCCGTTGATCATTCACAGAGACGTGAAGTCCAACAATATACTGCTGGACAAGCTGTTTGAGGCACATGTGTCCGACTTTGGGCTCGCCAAGTTCTTGCAAAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTATGGCTACATCGCTCCAGAATACGCTTACACACTGAAAGTGGACGAGAAAAGCGATGTGTACAGTTTTGGTGTAGTACTGCTTGAACTCATAGCCGGGAGAAAGCCAGTGGGTGATTTTGGAGAAGGCGTAGACATAGTGAGATGGGTCCTCAAAACCACATCAGAACTCTCTCAACCCTCCGATGCAGCCTCAGTATTAGCCGTTGTAGACTCCCGCCTCACCGAATACCCACTCCAAGCCGTAATTCATCTCTTCAAAATAGCAATGATGTGCGTTGAAGAAGACAGTTCTGCAAGGCCAACCATGAGAGAAGTTGTTCACATGCTCTCTAATCCCCCAAGGTCTGCCCCTACTCTAATCAATCTATAA 2922 45.62 MKRRPIDPFVSRLGSFFIFLFFASLCFANRDMEALLKMKSSMIGPGRSELGDWEPSPSSSPSAHCDFSGVTCDGDNRVVALNVSNLRLFGSIPPEIGMLDKIENLTLVSNNLTGKLPLEMAKLTSLKFLNLSNNAFRDNLTAEITVGMTELEVFDIYNNNFFGLLPVEFVKLKKLKHLDLGGCYFTGQIPAVYSEMQSLEFLSVRGNMLTGRIPASLGRLKNLRYLYAGYFNHYDGGIPPEFGSLSSLELIDLANCNLIGEIPPSLGNLKHLHSLFLQVNNLTGRIPSELSGLISLKSLDLSLNELTGEIPSSFVALQNLTLINLFNNRLHGPIPGFVGDFPHLEVLQLWNNNFTLQLPENLGRNGKLFLLDVATNHLTGLIPQDLCNGRLKTLILLDNYFFGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALEQLDISNNYFSGALPSQMSGEILGSLLLSNNHITGEIPAAIRNLENLQVVSLEHNQFTGNLPKEIFQLNKLLRINISFNNISGEIPDSVVQCTSLTLVDLSENYLVGVIPRGISKLKILSVLNLSRNHLTGQIPNEMRSMMSLTTLDLSYNNFFGKIPTGGQFSVFNVSAFIGNPNLCFPNHGPCASLHKNLKYVKLIIPLVAIFIVLLCVLAALYLRKRKKIQKSKAWKLTAFQRLNFKAEDVLECLKDENIIGKGGAGVVYRGSMPDGSVVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGGHLHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTTSELSQPSDAASVLAVVDSRLTEYPLQAVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRSAPTLINL 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3646988 3651754 + MELO3C003743.2.1 Cme04g00458 324719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00458 973 Gene3D Transferase(Phosphotransferase) domain 1 762 967 - -
Cme04g00458 973 Gene3D Ribonuclease Inhibitor 337 632 IPR032675 -
Cme04g00458 973 Gene3D Ribonuclease Inhibitor 30 145 IPR032675 -
Cme04g00458 973 Gene3D Phosphorylase Kinase; domain 1 652 761 - -
Cme04g00458 973 Pfam Leucine rich repeat 271 330 IPR001611 GO:0005515
Cme04g00458 973 Pfam Leucine rich repeat 533 592 IPR001611 GO:0005515
Cme04g00458 973 Gene3D Ribonuclease Inhibitor 146 231 IPR032675 -
Cme04g00458 973 SUPERFAMILY L domain-like 391 622 - -
Cme04g00458 973 SMART serkin_6 687 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00458 973 Pfam Leucine Rich Repeat 174 190 IPR001611 GO:0005515
Cme04g00458 973 Pfam Leucine Rich Repeat 247 269 IPR001611 GO:0005515
Cme04g00458 973 Gene3D Ribonuclease Inhibitor 232 336 IPR032675 -
Cme04g00458 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Cme04g00458 973 Pfam Protein tyrosine and serine/threonine kinase 690 960 IPR001245 GO:0004672|GO:0006468
Cme04g00458 973 SMART LRR_typ_2 148 171 IPR003591 -
Cme04g00458 973 SMART LRR_typ_2 123 147 IPR003591 -
Cme04g00458 973 SMART LRR_typ_2 196 220 IPR003591 -
Cme04g00458 973 SMART LRR_typ_2 293 317 IPR003591 -
Cme04g00458 973 SMART LRR_typ_2 341 365 IPR003591 -
Cme04g00458 973 SMART LRR_typ_2 483 507 IPR003591 -
Cme04g00458 973 SMART LRR_typ_2 245 269 IPR003591 -
Cme04g00458 973 SMART LRR_typ_2 555 579 IPR003591 -
Cme04g00458 973 SMART LRR_typ_2 436 460 IPR003591 -
Cme04g00458 973 SUPERFAMILY Protein kinase-like (PK-like) 678 960 IPR011009 -
Cme04g00458 973 SUPERFAMILY L domain-like 71 399 - -
Cme04g00458 973 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 14 967 - -
Cme04g00458 973 PANTHER UNNAMED PRODUCT 14 967 - -
Cme04g00458 973 Pfam Leucine rich repeat N-terminal domain 28 73 IPR013210 -
Cme04g00458 973 ProSiteProfiles Protein kinase domain profile. 687 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00458 Cme-Chr4:3646988 Cme06g02141 Cme-Chr6:27146961 0 dispersed
Cme11g00106 Cme-Chr11:944255 Cme04g00458 Cme-Chr4:3646988 1.05E-17 dispersed
Cme12g01285 Cme-Chr12:20912151 Cme04g00458 Cme-Chr4:3646988 1.82E-07 dispersed
Cme04g00458 Cme-Chr4:3646988 Cme08g00688 Cme-Chr8:4552890 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64794 PF07714 PK_Tyr_Ser-Thr 8.20E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00458 K00924 - csv:101221360 1875.91