Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g00460 | ATGTCTACACAAATTTCGTTTCTATTATATCTTCTACCAATCCTAACTTCACTCTCAGGAGTATTCTCCACCACTTTCAGCATAGTAAACCAATGTGATTACACAGTTTGGCCCGGAATTCTCTCCAACGCCGGAGTTTCACCACTTCCCACCACCGGCTTCGTCCTCGCCGCCGGTGAGTCCAAAACCATCTCCGCTCCCGCCTCTTGGGGTGGCCGATTCTGGGGCCGAACCCACTGTTCACAAGACTCCACCGGTAAATTCTCTTGCCTCACTGGAGATTGCGGCTCCGACAAAATCGAATGTACCGGAAACGGCGCGAAACCACCGGCAACTCTGGCGGAATTCACTCTCGACGGCGCCGGCGGGCTTGATTTCTTCGACGTAAGTTTGGTGGACGGTTACAATATCCCTATGTTGGTTGTCCCACAAGGCGGCAGCGGCGAGAAATGCATGAGCACGGGATGCGTTGTGGATTTAAACGACGCTTGTCCTCAGGAGCTGAAGGTTATGAGCGTCGACGGCGGTGATAACGTGGCGTGTAAAAGCGCTTGTGAAGCATTTAACCAACCGCAGTATTGTTGTAGTGGCGAGTACGGGACTCCAGATACTTGTAAACCTTCCGCGTACTCGCAGGTGTTCAAAAACGCTTGCCCACGCGCTTACAGCTACGCCTACGACGACAAAACAAGCACGTTTACATGTGCCGACGCTGATTATATTATTACGTTCTGCCCTTCACCCACCACTAGTCAGAAATCAACGGATAATCACAACACAAACACACCGGCGTTCAACGGCGGCAACGGCACAATGGTATACGAAGGGGCTGAGTATGATTTAAGCGGCGCGTCGAGAACCAGTCTCCGTCATATTCTAGGGGTAGTCGTTGCCACGGTGGCAATTCTTCAAATTCGGCAACTCTTTTGA | 930 | 51.51 | MSTQISFLLYLLPILTSLSGVFSTTFSIVNQCDYTVWPGILSNAGVSPLPTTGFVLAAGESKTISAPASWGGRFWGRTHCSQDSTGKFSCLTGDCGSDKIECTGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGSGEKCMSTGCVVDLNDACPQELKVMSVDGGDNVACKSACEAFNQPQYCCSGEYGTPDTCKPSAYSQVFKNACPRAYSYAYDDKTSTFTCADADYIITFCPSPTTSQKSTDNHNTNTPAFNGGNGTMVYEGAEYDLSGASRTSLRHILGVVVATVAILQIRQLF | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3668049 | 3670650 | - | MELO3C003745.2.1 | Cme04g00460 | 324721 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g00460 | 309 | PANTHER | BNAA02G17480D PROTEIN | 8 | 270 | - | - | |
| Cme04g00460 | 309 | SUPERFAMILY | Osmotin, thaumatin-like protein | 24 | 247 | IPR037176 | - | |
| Cme04g00460 | 309 | PANTHER | OS03G0233200 PROTEIN | 8 | 270 | IPR001938 | - | |
| Cme04g00460 | 309 | Gene3D | Thaumatin | 24 | 246 | IPR037176 | - | |
| Cme04g00460 | 309 | SMART | tha2 | 26 | 246 | IPR001938 | - | |
| Cme04g00460 | 309 | CDD | TLP-PA | 25 | 245 | - | - | |
| Cme04g00460 | 309 | ProSiteProfiles | Thaumatin family profile. | 23 | 246 | IPR001938 | - | |
| Cme04g00460 | 309 | Pfam | Thaumatin family | 30 | 246 | IPR001938 | - | |
| Cme04g00460 | 309 | PIRSF | PR5 | 1 | 275 | IPR001938 | - | |
| Cme04g00460 | 309 | PRINTS | Pathogenesis-related protein signature | 25 | 37 | IPR001938 | - | |
| Cme04g00460 | 309 | PRINTS | Pathogenesis-related protein signature | 73 | 84 | IPR001938 | - | |
| Cme04g00460 | 309 | PRINTS | Pathogenesis-related protein signature | 125 | 141 | IPR001938 | - | |
| Cme04g00460 | 309 | PRINTS | Pathogenesis-related protein signature | 236 | 245 | IPR001938 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme03g01872 | Cme04g00460 | CCT | |
| Cme03g01872 | Cme04g00460 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g01873 | Cme-Chr3:26956572 | Cme04g00460 | Cme-Chr4:3668049 | 9.99E-155 | dispersed | |
| Cme04g00460 | Cme-Chr4:3668049 | Cme11g00396 | Cme-Chr11:4012861 | 2.74E-120 | dispersed | |
| Cme04g02481 | Cme-Chr4:31272280 | Cme04g00460 | Cme-Chr4:3668049 | 1.09E-34 | transposed | |
| Cme04g02482 | Cme-Chr4:31274812 | Cme04g00460 | Cme-Chr4:3668049 | 4.62E-82 | transposed | |
| Cme06g01276 | Cme-Chr6:10571172 | Cme04g00460 | Cme-Chr4:3668049 | 1.64E-67 | transposed | |
| Cme06g02404 | Cme-Chr6:31214573 | Cme04g00460 | Cme-Chr4:3668049 | 6.07E-113 | transposed | |
| Cme09g00117 | Cme-Chr9:873771 | Cme04g00460 | Cme-Chr4:3668049 | 2.04E-84 | transposed | |
| Cme10g00455 | Cme-Chr10:2890111 | Cme04g00460 | Cme-Chr4:3668049 | 2.06E-67 | transposed | |
| Cme12g00206 | Cme-Chr12:2137387 | Cme04g00460 | Cme-Chr4:3668049 | 4.90E-57 | transposed | |
| Cme03g01872 | Cme-Chr3:26947101 | Cme04g00460 | Cme-Chr4:3668049 | 3.53E-97 | wgd | |
| Cme04g00460 | Cme-Chr4:3668049 | Cme08g00937 | Cme-Chr8:6165372 | 2.19E-86 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g00460 | - | - | csv:101214136 | 608.601 |