Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00462 ATGGCTGGTGAATATAGGTTCTCAATGGACCAAAAGGACATCGTGAGGATTTTGGTGGCCACCATTGATGATTTCATCCGAGGTCGTTTGATCAATAAAGAGCAGAGAAACCTTCACAAAGAGCAGTGTGCTGAGAGATTGGCAGCAGAAGGTGGAAGTAATGACAAAGATACAGAGGTTAGGTACTCGGATCAAGCAGTGCTGGCTAATTTGGATTGGGGTATTGAAGCCCTTGAGGAGGCTTTAAACACATCCAATATGGAGACTAAGCTGGCACGACTTGACCATGCAGAGAAGATGCTTCAAGTGTGTGCCTTGTTGAACTCTAATGAGAAAACTGCTGGAGTTCCCAATTTCTACCTTGCTGCTTGGGCTCACCTAAATCTTTCATATCTCTGGAAATTGCGAGGAAATGCTCACAACTCAGTCCTCCATATTCTTGAGATGTTTATTGTGGATCCCTTCTTTTCACGCAATGATTTTGCTCCTGAACTCTGGAAAGAACTCTTTCTTCCACACATGAGCTCAATTGTTGGGTGGTATTCAGAGGAGAGGCATAGACTTGTGATCGAAGTGATTCCTGATTCTTCCGATTTATCCTTCACAGCTGATTTAGATCAATTCTTCAACGAATCTTTGATATTTTCTCTGAGGCCTGATCATGCTGAGAAATTGCAGAAGTTGGAGCAGCTTTATGGAGCATCTTTGGATGAGAATACGAGGCTCTTTGCTAAATACTTCAAAGATTGTATGAATTCTGATTCAAGCTCCACCAAGAAGGTTGCCCCAATGTTGCCAATCGCAGAGCCACCTATGACTCCTCTTCATGAAGTGAGCCGCTCAATTCCCGATTACATAAAATTTGGACCTATTTTACCCAAAAGTGCCGGGTTTTCGTCCATCAAACCAAAATCTAAAGATGGTACGACAGAAGCAAGTAGGCCAAAGGGGGCTTCCAGTCCCACCAACAACACAGAGAAATTTGTAGGGCGATATTGTCAGAGCGATTTGCTAGAGGAGAATGAGGATGATCCTGATCAGGAACCTTACGATTCTTACGATCTCAGCGATACCGCGACTTATAAATTACTATCGCCGAGTAGCACAAGGACGTCGGAGGATGAGCAAATAGGACCTAATGAGGAGGTGTCGAAAATGGGGAGTCGAAAACATTCTCCCACCATTTTTTCTCCAATTGCATCTCCTTCAGTCCCTTCACCGAGAGTGCTATCTCCAACCGTGAATGAGAGGAAAAGTGAATCGCGTACATTGCGACTGTTATCCAGTCGTGGCGAACAACGTGTTGCTACCTCCGCCCTTGGATCACCAGCTACAAGAAGTGATTACAGCTTCAGTTCGGTAGAGTCTGATGGTGAAAAAGATGGCCACAGAAGAATATGTAAGCCGACGCACAATACAACCTATGACAACGTGAGTAGCCAAGACTTCGAGAATTGTTCAATAGATAAACTTGAGGAGGAAAGTAGAAGCCGCTCGTCTGAGAATGTAACACATATGGTACGACCCCCTAAAGATTTCGTATGCCCCATAACAGGTCAGATTTTCAGTGATCCTGTTACTCTCGAAACTGGGCAGACTTATGAAAGAAGAGCTATTCAGGAATGGTTGAAAAGAGGAAATACAACTTGCCCCATTACGCGGCAGCCATTGTCTTCAACTGTAATGCCTAAAACGAATTATGTCTTGAAAAGACTGACAACGTCTTGGCAGGAACAGCATCCTGATCTTGCTCAGGATTATTCGTGGACTGGTACATCGGTAAGTACTGTCGGTTCTACCTTCAAAAGGAGGAGCTCTCTGGCAACTACTCCTTGCCAACCATTTCATGGTTCTCTTAACAGGACTTACGAGTCTCTTAACCAAAAAGGAAAAAAATTAATGCAAGAAGCAGTGTCCTTATCACCCACCAGTGTAATATCTCAAGCCACAGTCGAGAAAATCATCAACAGTTTAAAACCTTTTGTCTCTTGTCTTTGTAATTTTGAGAACTTGAAACAATGCGAGACTGCTGTAATCACTATAGCAGGGTTCTGGAAGGACTCAAAAGGTGATCCAGCAGTCCATTCCTACTTATCCGAATTGGCTGTAGTGAACGGCTTTATGGAAATACTGTTAAATTCCCGGGAAAGAGAAGTCCTCAGAACCTCAATTTACGTTCTTTCTGAGCTTATTTGTGCAGATGGAAGTGTTGGAGAGTCCCTTAATAGTCTAGATTCAGATTTTGATTGCCTAGCTTCTTTGCTGACGAGTGGGTTGTCAGAGGCTTCTGTTCTTATGTGCCTGCTAAGGCCCACATTTACTCAGTTGTCAGCTCATGACCTTATACCTTCCCTTGTCCAGCTGCTCCAGAAGAAAAATGAAGATTTCGATGATCTGCCATTTGTAATAGAGCCAAAAGATGCTGCTATCGCAATGCTTGAACAGATTTTGATGGGAGCGGATGAAGATAGCCAATCCCGGAATGTTGAGAGTCTTATATCCGCAGAAGGATGCCCTGCATTAGTCAAGTTTTTGGATGGGGCAGAAGTGAGGAGGCCAATACTTTCTATGCTTTTATGTTGTATGCGAGTCAACAAAGGTTGCAAGGACTCGATCGTAGAGAAGATTGAGCTTGCTCCGGTTCTTGAGTTACTTTATACTGGAAATGAGGACGACAGAGGCCTTTGTGTGGCTTTTCTGTCAGAGCTGGTTCAAATGAACAGAAGGACACAATGCAATCAAATTTTGCAGAAAATTAAAAATGAAGGAGCATTCAGTACGATGCATACACTTCTTACACATCTTCAAAAGGCTACAATTGAGCAACAACCGAGCATTGCTTCCCTTCTTCTCCAGCTGGATCTCCTGGTTGAACCACGAAAAATGAGCATTTACCGAGAAGAATCTATAGATGCACTGTTTGAAGCTTTTTGTAGAAAGGACAACTATCACGTTCAAACTGCAGCTGCAGATGCTTTATTACATCTATCTGGGCGATTGACATCCTCAGGAAAGTGCTATGCAAAATCGTGGTTGCTCAAACTTGCAGGATTTGATCAACCTTACAATGCTTTGATGAAGGACGAGGGACTGAGGAAGCCTGACAGCGAATTGTCAGAGAGAGAGGAGGAAGAGAAGGCAATCAGTGTATGGGAAAAAAGGGTAGCTCTGGTTATTTGTAACCATGAAAAGGGGTACATTTTTAAAGTTATGAAAGAATGCCTGAAGAGTAAATCCTTAGAGATGGCAAGGTTTTGTCTTGTCATCGTTTCCTGGCTGTGCCACATGGCTTCGATGCTCCCAGATACTGGGGTACAAGAGACTGCTCGCAGATTCTTGCTTGATGAACTTGTAAACGTTCTACAATCTTCTAATAGCCAGGAGGACAAGATTTTGGCATGTCTTGCTTTAAAAACTTTCATTAGCGATCCTGCTGCACTTGAGGAACTAGGGCTTTATGCAAGATCCATCAACAAAACGTTGAGAAAGCTTAGGAGAAGCTCATCGGTGGTCAATGCTATAATGAAAGCCTTGATGAACTTGCCATCTGTTGACACAACAGAGCTCTGGAGTTACACTGAAGTTGGTGCAATAGATTCCAGCTCAAATGGAGAGGTTTTGTCTCTGCTTCATTTGGAAGGGCGGGTTTTAAGTGGTCACTCAGATGGAACCATCAAGGTTTGGTGTGCTGGAAATAAAGTATTAAGGTTGATCCAAGAAGCTCGCAAGCACTCAAAAGCTGTAACATGCCTTTGTGTTTCCTCTTCGTACGACACAGTATACAGTGGTTCCTTGGACAAAACAATTCGGGTATGGAGCATCAAATCTGAAGAAATACAGTGCGTTCAAGTCCACGACGTGAAGGAGCCAGTCTATGACTTGAAAGTCAATGGCAAATTCGCATGCTTTATTTCTCAAGGAACTGGAGTTAAGGTGTTCAACTTCTCTGGGGTTCCCAAGCATGTAAATTTCAACAAATACGTCAAGTGCCTGGCACTATCAGAAGATAAACTCTATTGCGGTTGCTCTGGTGACAGCATAATGGAGGTGGATTTGTCCAAAAATACCATAAGCACATTCTACGCCGGCGTAAGAAAGTTGCTTTGGAAACAAAACATCTACTCCTTACACCTCCACGGTGACCTACTATCTGCTGCCGGTTCGGCTGTGGATGGAACAGCAGGGAAGACGTTTTCGCTGTCGAACAAGACAACAGTAGGATCCTTTTCAACTGGAGTTGACGTCCATCACATGGTCGCAAGCACCGATTTCTTGTTTACAGCCTCCAGATTGGGGATGTTAATAGAGATTTGGACGAAAGAAAAACACACAAAAATTGGTTCTGTTAAATTAGGTAGCAGTGCTAGTGGTAGCCACACAAAGATTACTTCCCTAACTACGGACGACGGAGGATTGCTCCTTGTTGGTACCTCCGATGGAAAGATACAGGTTTGGGCCCTTGATTGA 4467 43.56 MAGEYRFSMDQKDIVRILVATIDDFIRGRLINKEQRNLHKEQCAERLAAEGGSNDKDTEVRYSDQAVLANLDWGIEALEEALNTSNMETKLARLDHAEKMLQVCALLNSNEKTAGVPNFYLAAWAHLNLSYLWKLRGNAHNSVLHILEMFIVDPFFSRNDFAPELWKELFLPHMSSIVGWYSEERHRLVIEVIPDSSDLSFTADLDQFFNESLIFSLRPDHAEKLQKLEQLYGASLDENTRLFAKYFKDCMNSDSSSTKKVAPMLPIAEPPMTPLHEVSRSIPDYIKFGPILPKSAGFSSIKPKSKDGTTEASRPKGASSPTNNTEKFVGRYCQSDLLEENEDDPDQEPYDSYDLSDTATYKLLSPSSTRTSEDEQIGPNEEVSKMGSRKHSPTIFSPIASPSVPSPRVLSPTVNERKSESRTLRLLSSRGEQRVATSALGSPATRSDYSFSSVESDGEKDGHRRICKPTHNTTYDNVSSQDFENCSIDKLEEESRSRSSENVTHMVRPPKDFVCPITGQIFSDPVTLETGQTYERRAIQEWLKRGNTTCPITRQPLSSTVMPKTNYVLKRLTTSWQEQHPDLAQDYSWTGTSVSTVGSTFKRRSSLATTPCQPFHGSLNRTYESLNQKGKKLMQEAVSLSPTSVISQATVEKIINSLKPFVSCLCNFENLKQCETAVITIAGFWKDSKGDPAVHSYLSELAVVNGFMEILLNSREREVLRTSIYVLSELICADGSVGESLNSLDSDFDCLASLLTSGLSEASVLMCLLRPTFTQLSAHDLIPSLVQLLQKKNEDFDDLPFVIEPKDAAIAMLEQILMGADEDSQSRNVESLISAEGCPALVKFLDGAEVRRPILSMLLCCMRVNKGCKDSIVEKIELAPVLELLYTGNEDDRGLCVAFLSELVQMNRRTQCNQILQKIKNEGAFSTMHTLLTHLQKATIEQQPSIASLLLQLDLLVEPRKMSIYREESIDALFEAFCRKDNYHVQTAAADALLHLSGRLTSSGKCYAKSWLLKLAGFDQPYNALMKDEGLRKPDSELSEREEEEKAISVWEKRVALVICNHEKGYIFKVMKECLKSKSLEMARFCLVIVSWLCHMASMLPDTGVQETARRFLLDELVNVLQSSNSQEDKILACLALKTFISDPAALEELGLYARSINKTLRKLRRSSSVVNAIMKALMNLPSVDTTELWSYTEVGAIDSSSNGEVLSLLHLEGRVLSGHSDGTIKVWCAGNKVLRLIQEARKHSKAVTCLCVSSSYDTVYSGSLDKTIRVWSIKSEEIQCVQVHDVKEPVYDLKVNGKFACFISQGTGVKVFNFSGVPKHVNFNKYVKCLALSEDKLYCGCSGDSIMEVDLSKNTISTFYAGVRKLLWKQNIYSLHLHGDLLSAAGSAVDGTAGKTFSLSNKTTVGSFSTGVDVHHMVASTDFLFTASRLGMLIEIWTKEKHTKIGSVKLGSSASGSHTKITSLTTDDGGLLLVGTSDGKIQVWALD 1488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3688393 3696094 + MELO3C003747.2.1 Cme04g00462 324723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00462 1488 Pfam U-box domain 510 580 IPR003613 GO:0004842|GO:0016567
Cme04g00462 1488 MobiDBLite consensus disorder prediction 299 473 - -
Cme04g00462 1488 CDD RING-Ubox_PUB 513 555 IPR045210 -
Cme04g00462 1488 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1488 - -
Cme04g00462 1488 MobiDBLite consensus disorder prediction 358 374 - -
Cme04g00462 1488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1241 1278 - -
Cme04g00462 1488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 583 IPR013083 -
Cme04g00462 1488 SUPERFAMILY WD40 repeat-like 1214 1485 IPR036322 GO:0005515
Cme04g00462 1488 Pfam WD domain, G-beta repeat 1243 1273 IPR001680 GO:0005515
Cme04g00462 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1241 1282 IPR001680 GO:0005515
Cme04g00462 1488 SMART WD40_4 1191 1229 IPR001680 GO:0005515
Cme04g00462 1488 SMART WD40_4 1234 1273 IPR001680 GO:0005515
Cme04g00462 1488 SMART WD40_4 1448 1486 IPR001680 GO:0005515
Cme04g00462 1488 SMART WD40_4 1308 1351 IPR001680 GO:0005515
Cme04g00462 1488 MobiDBLite consensus disorder prediction 390 417 - -
Cme04g00462 1488 Gene3D - 1320 1488 IPR015943 GO:0005515
Cme04g00462 1488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1455 1488 - -
Cme04g00462 1488 SMART Ubox_2 512 576 IPR003613 GO:0004842|GO:0016567
Cme04g00462 1488 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1488 - -
Cme04g00462 1488 Gene3D - 1115 1319 IPR015943 GO:0005515
Cme04g00462 1488 SUPERFAMILY ARM repeat 815 1165 IPR016024 -
Cme04g00462 1488 MobiDBLite consensus disorder prediction 302 330 - -
Cme04g00462 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1469 1488 IPR001680 GO:0005515
Cme04g00462 1488 SUPERFAMILY RING/U-box 503 581 - -
Cme04g00462 1488 ProSiteProfiles U-box domain profile. 508 583 IPR003613 GO:0004842|GO:0016567
Cme04g00462 1488 Gene3D - 640 954 IPR011989 -
Cme04g00462 1488 MobiDBLite consensus disorder prediction 428 452 - -
Cme04g00462 1488 MobiDBLite consensus disorder prediction 453 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00462 - - - csv:101221826 2727.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01448 Cme-Chr2:21114097 Cme04g00462 Cme-Chr4:3688393 0 dispersed
Cme04g00462 Cme-Chr4:3688393 Cme06g00742 Cme-Chr6:4894102 2.03E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00462 Cme_Chr04 FPKM 11.08 13.046917 11.313818 8.223576 17.352999 20.766232 26.958607 8.920491 6.600517 6.941819