Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00464 ATGTCTTCTCAAGATCAAAAGCCGCTGAAGAAAGCCAAACCGGAGCTAGACGATTCGGATGACGGAATGAGCCTCGGTGCCCTTTTACAAGAAAAGAGGAAGAAACTCTTAAATGTGGGTTCTAAACTTCTCTCAAAGCCGAAGAAGGAAGAACTTCTGGGAGTTGATGGGTTGGGAAAATCTCCCAAAATAGATTCTGGGTCTGCTCCAAAGGGCTCCAAGGTTAAGAAAGAAGAGCGTTTCAACTCTGTTAATGATGATTTTGACGAAAAGCCTGCTAAAAAGAGCTCTGCTGCCAAACGTGATACGGAACTGAAGAAAAAGAAGAAAGTGAAGGAGGAGGAGAAGAGCAAGAGCTCAAAGGAGTTGGAGAGCCTGAAAAAAGAGAGAAAGCAAAAGAAGGTATATGATTTGCCTGGTCAGAAGCGAGATCCTCCAGAAGAGAGAGACCCGCTGAGAATTTTCTATGAATCGCTCCATAAGCAACTTCCCCACAGTGAAATGGCACAGTTTTGGATGATGGAGTCTGGTTTGTTATCCAAAGAAGAAGCAAAGGAAGTTTTTGAAAAGAAGCAGAAAAAGGCACCATTGCAAAAACTGAGTTCCCCAATGAAGACTGTGAGTGCTGTAAAGAGCGTTACCAAGACCGCCGTTGTCAAGAAAACTGTCCAATCTTCTCCGCTCTCTTCAAATAGAACGACGAAAGTGGACTCTAAAGTCGTTATGAAATCGTCGAAGAAGCGCAAGTCCAAAGATGACAGTTCTGAAGATGATTCAGACGACGACTTTTTTATCAGTCAAAGTATAAAAAAGAAGGCAAGAGCAGCCTAA 831 43.08 MSSQDQKPLKKAKPELDDSDDGMSLGALLQEKRKKLLNVGSKLLSKPKKEELLGVDGLGKSPKIDSGSAPKGSKVKKEERFNSVNDDFDEKPAKKSSAAKRDTELKKKKKVKEEEKSKSSKELESLKKERKQKKVYDLPGQKRDPPEERDPLRIFYESLHKQLPHSEMAQFWMMESGLLSKEEAKEVFEKKQKKAPLQKLSSPMKTVSAVKSVTKTAVVKKTVQSSPLSSNRTTKVDSKVVMKSSKKRKSKDDSSEDDSDDDFFISQSIKKKARAA 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3706037 3708756 - MELO3C003748.2.1 Cme04g00464 324725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00464 276 MobiDBLite consensus disorder prediction 39 153 - -
Cme04g00464 276 PANTHER NUCLEOLIN 1 275 - -
Cme04g00464 276 MobiDBLite consensus disorder prediction 239 255 - -
Cme04g00464 276 MobiDBLite consensus disorder prediction 191 276 - -
Cme04g00464 276 MobiDBLite consensus disorder prediction 199 238 - -
Cme04g00464 276 MobiDBLite consensus disorder prediction 1 27 - -
Cme04g00464 276 PANTHER OS05G0596200 PROTEIN 1 275 - -
Cme04g00464 276 Coils Coil 109 129 - -
Cme04g00464 276 MobiDBLite consensus disorder prediction 70 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00464 - - - csv:101214860 372.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01742 Cme-Chr3:25970070 Cme04g00464 Cme-Chr4:3706037 3.81E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1113 Blo01g01598 . Bda01g00484 . Bpe02g00348 . . . . . Cma01g01975 . . . . . . . . . . . . . . . . . . . . . . Cone17ag1406 Cone20ag0077 . Csa03g04284 Chy04g00413 . . . . . . . . . Sed01g2479 Cmo01g02033 . . . . . . Cpe02g00068 Bhi09g02083 Tan01g5022 Cmetu04g1253 . Hepe01g1611 Mch11g0113 . Cla05g01866 Cam05g1995 Cec05g2007 Cco05g2065 Clacu05g1987 Cmu05g1868 Cre05g1992 . . . Cme04g00464
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012373 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00464 Cme_Chr04 FPKM 26.474855 27.858688 13.086867 13.261057 9.507702 9.718909 9.455447 1.644596 1.750013 1.442973