Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00472 ATGTCGGTCGCTGCTGTTGGATCTTTCTCTCCACTAAGATCTCCCACGTGGATCGCCCGCCCTCGCTTCACCATGGCCGTCGGATCCAAAGCCGTCTCTGTTTCCCCTATTTTGACTAAGTTTCAGAAGGATTGCGAGACCCCTTTGCCGGTATTGCGCCACGTGGCGGATGCAATGGCCAATGATATGAGAGCTGGGCTTGCTGTCGACGGCGGCAGTGATCTGAAGATGATTCTTAGCTATGTCGACACTCTCCCTAGCGGGAATGAGGAAGGATTGTTTTATGCATTGGATCTTGGTGGCACTAATTTTCGAGTGCTTAGAGTTCAATTGGGTGGCAAAGAAAAACGTGTTATTGCTACTGAATTTGAACAAGTTTCAATCCCTCAACACTTAATGTTTGCCACATCTCAGCATCATCTGTTAACTATGAACTTCCTTGTTGTTCTGAAGGAGCTATTTGATTTCATTGCTTCTGGTCTGGAAAAATTTGTAGAGAGTGAAGGTGACAGATTCCACCTTTCTCCTGGAAGAAAGAGAGAGACTGGATTCACATTCTCATTCCCTGTTAAACAAACTTCCATTGATTCTGGCATATTAATCAAGTGGACTAAAGGTTTTGCTGTTTCTGGAGTGGCTGGGAAAGATGTTGTTGCTTGTCTAAATGAAGCCATGGAAAGGCGGGGACTAGATATGCGCGTTTCGGCCCTTGTTAATGATACGGTTGGAACCTTGGCTGGAGCAAGATATTATGACGATGATGTCGTGGCTGCTGTTATTTTAGGTACAGGAACCAATGCCTGTTATATAGAACAAAAGGATGCTATTCCTAAGCTGCCAGGCCAGGGATCTTCTTCAGGGGAAACAATTATTAACACAGAATGGGGAGCATATTCAAATGGTCTTCCTCTCTCTGTTTTTGATAGAGAGATGGATGCTGCTAGTATCAATCCAGGGGAGCAGATCTTTGAGAAGACAATAGCTGGAATGTACCTCGGTGAAATTGCTCGTAGAGTACTTTTAGCAATGGCTGAATTCTCCCCTCTTTTTGGCAAATCCATTCCCGAAAAGCTGTCAAGGCAATTCATCCTTAGCACACCAGATCTATGTGCTATGCAACAAGATGTCTCTGACGACCTTCAAGCAGTCGGGTCAATTTTGTACAACGTTGTCGGGGTCGAGTCGGATTTAAGCGCAAGAAAAATTGTCGTAGAGGTGTGTGACACAATTGCAAAGCGAGGGGGACGATTAGCAGGGGCGGGAATTGTAGGCATCCTGAAGAAAATAGAAGATTTTGAAGGTGTAAAGGCTGGAAAGAGGAGAGTTGTGGCCATGGATGGAGGATTGTATGAGAATTATCCACAGTACAGAAAGTACCTTAAAGAAGGGGTAACAGAACTTCTGGGGACAGAGTTGGCTAAAAATGTGGCCATTGAACATACTAAAGATGGATCTGGCATTGGGGCTGCTCTTTTGGCTGCTTCAAACTCTATTTATAGAACATGA 1506 44.75 MSVAAVGSFSPLRSPTWIARPRFTMAVGSKAVSVSPILTKFQKDCETPLPVLRHVADAMANDMRAGLAVDGGSDLKMILSYVDTLPSGNEEGLFYALDLGGTNFRVLRVQLGGKEKRVIATEFEQVSIPQHLMFATSQHHLLTMNFLVVLKELFDFIASGLEKFVESEGDRFHLSPGRKRETGFTFSFPVKQTSIDSGILIKWTKGFAVSGVAGKDVVACLNEAMERRGLDMRVSALVNDTVGTLAGARYYDDDVVAAVILGTGTNACYIEQKDAIPKLPGQGSSSGETIINTEWGAYSNGLPLSVFDREMDAASINPGEQIFEKTIAGMYLGEIARRVLLAMAEFSPLFGKSIPEKLSRQFILSTPDLCAMQQDVSDDLQAVGSILYNVVGVESDLSARKIVVEVCDTIAKRGGRLAGAGIVGILKKIEDFEGVKAGKRRVVAMDGGLYENYPQYRKYLKEGVTELLGTELAKNVAIEHTKDGSGIGAALLAASNSIYRT 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3731218 3734903 - MELO3C003755.2.1 Cme04g00472 324733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00472 501 PANTHER HEXOKINASE 22 499 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Cme04g00472 501 PANTHER HEXOKINASE-LIKE 1 PROTEIN-RELATED 22 499 - -
Cme04g00472 501 Pfam Hexokinase 257 494 IPR022673 GO:0005524|GO:0005975|GO:0016773
Cme04g00472 501 Gene3D - 58 482 - -
Cme04g00472 501 SUPERFAMILY Actin-like ATPase domain 254 495 IPR043129 -
Cme04g00472 501 CDD NBD_sugar-kinase_HSP70_actin 96 281 - -
Cme04g00472 501 ProSiteProfiles Hexokinase domain profile. 32 494 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Cme04g00472 501 SUPERFAMILY Actin-like ATPase domain 32 252 IPR043129 -
Cme04g00472 501 Pfam Hexokinase 38 250 IPR022672 GO:0005524|GO:0005975|GO:0016773
Cme04g00472 501 PRINTS Hexokinase family signature 257 271 - -
Cme04g00472 501 PRINTS Hexokinase family signature 321 343 - -
Cme04g00472 501 PRINTS Hexokinase family signature 234 250 - -
Cme04g00472 501 PRINTS Hexokinase family signature 403 425 - -
Cme04g00472 501 PRINTS Hexokinase family signature 479 495 - -
Cme04g00472 501 PRINTS Hexokinase family signature 182 207 - -
Cme04g00472 501 PRINTS Hexokinase family signature 95 111 - -
Cme04g00472 501 Gene3D - 80 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00472 K00844 HK; hexokinase [EC:2.7.1.1] - csv:101216058 910.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00186 Cme-Chr2:1446660 Cme04g00472 Cme-Chr4:3731218 0 dispersed
Cme04g00472 Cme-Chr4:3731218 Cme05g00182 Cme-Chr5:1246730 7.97E-138 dispersed
Cme04g00472 Cme-Chr4:3731218 Cme05g02008 Cme-Chr5:28566134 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1105 . Blo12g00884 . . . Bpe04g00247 Bma04g00247 . . . . Cma09g00105 . . . Cpe06g00068 . . . . . . . . . . . . . . . . Cone7ag1884 . . Lsi04g01742 Csa03g04277 Chy04g00420 . . . . . . . . . Sed13g1574 . Cmo09g00101 . . . Car09g00095 . . Bhi09g02092 Tan01g5013 Cmetu04g2766 . Hepe01g1686 Mch11g0120 . Cla05g01871 Cam05g2002 Cec05g2014 Cco05g2072 Clacu05g1994 Cmu05g1875 Cre05g1999 . . . Cme04g00472
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012601 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00472 Cme_Chr04 FPKM 13.428452 13.874951 13.475662 12.129508 16.015783 16.435106 16.276714 21.576651 22.902174 20.444828