Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00474 ATGGCACTCTTAACAAATTCCTTCCAAGATCACAAGAAACCCCTCCCCAATAAACGCCGGAAAAAACATCCAAACCCAACTCCCTCGCCTTCCTCCGCCCAATCCTCATGGGACCATATCAAGAACCTCATCACCTGCAAACAGGTTGAGGTTTCTAGAGTTCAAGAGCAGGGAAAACGGTCGCCGGCCTACTCGAAGTTGGGATCTTCTTGTAGCTCTATATGTAGCTTTAGAGATGTGGTTCATGGCAATGCTAAAGTGGTTCATAGGGCCGATAACTCCCCGGAAAGCAGCTCCGTCGGACAGGAAACTAGGTTACTTACTAGGAAATCTGCAAACGGTTCTTCTTCTCGTTCTTTAACGGCGCCGGCTCCGGCCAGAACTAAAAACGGTGGTTCGGGTTCTGCTTCCTACAATTCGTCGTCTTCTAGAGGAATACAATTACGAAAGCTTTCTGGGTTTCCAATTCCAAGGAGTTCTATATGTTCATGTCCTCAGTGTGGAGAGGTTTTCCCCAAGATCGAAAGCTTAGAGCTTCATCAATTAGTTCGTCACGCTGTATCGGAATTGGGTCCTGAGGATTCTGGTCGAAACATCGTGGAGATTATTTTTAAATCAAGCTGGCTAAAAAAGGACCGTCCAATTTGCAAGATCGAACGTATATTAAAGGTCCACAATACCCAACGCACAATCCAACGGTTTGAGGATTGTCGTGACGCAGTGAAGACACGTGCACTTGGAAGCTCCAGAAAAAACCCGCGATGTGCGGCCGACGGTAATGAGTTGCTGCGCTTCCACTGCAGCGCCTTGTTGTGCGACCTTGGCTCACGTGGCTCCACCGGCTTGTGTGGCTCGATTCCCGGCTGCGGTGTCTGCACTGTCATCCGTCATGGATTCCAGTGTAAACCCGGTGGCCCTCCTGGTGTACGCACCACTGCTAGTAGTGGAAGGGCCCACGATTCGTTTGAGTGCGGCGACGGACGTCGACGGGCGATGTTGGTGTGCCGTGTCATCGCCGGCAGAGTGAAGCGTATCTCGGAGGATGCTGGGACGGGGACGACGACAACGGCTACGGATCAGGAGGAGAATGTGGTGACGGCGGCGGCGGTGGCTGCCTCATACGACTCTGTTTCACGGCACTCCGGGATGTACTCGAATCTGGAGGAGTTGGTTATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTTGTGATCTACGAAGCGCTCCAAAACTAA 1236 51.21 MALLTNSFQDHKKPLPNKRRKKHPNPTPSPSSAQSSWDHIKNLITCKQVEVSRVQEQGKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLTRKSANGSSSRSLTAPAPARTKNGGSGSASYNSSSSRGIQLRKLSGFPIPRSSICSCPQCGEVFPKIESLELHQLVRHAVSELGPEDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSSRKNPRCAADGNELLRFHCSALLCDLGSRGSTGLCGSIPGCGVCTVIRHGFQCKPGGPPGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRISEDAGTGTTTTATDQEENVVTAAAVAASYDSVSRHSGMYSNLEELVIFNPKAILPCFVVIYEALQN 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3750890 3753495 - MELO3C003757.2.1 Cme04g00474 324735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00474 411 MobiDBLite consensus disorder prediction 88 141 - -
Cme04g00474 411 SUPERFAMILY ADP-ribosylation 187 407 - -
Cme04g00474 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 190 IPR013087 -
Cme04g00474 411 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 27 410 - -
Cme04g00474 411 MobiDBLite consensus disorder prediction 91 141 - -
Cme04g00474 411 MobiDBLite consensus disorder prediction 1 37 - -
Cme04g00474 411 ProSitePatterns Zinc finger C2H2 type domain signature. 162 185 IPR013087 -
Cme04g00474 411 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 27 410 - -
Cme04g00474 411 Gene3D - 186 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00474 Cme-Chr4:3750890 Cme09g00823 Cme-Chr9:10602865 3.10E-96 dispersed
Cme04g00474 Cme-Chr4:3750890 Cme06g02044 Cme-Chr6:25731769 1.74E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41151 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00474 - - csv:101222539 738.413