Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00480 ATGTCTCTATTCACTAAACTCCACATCGCCATTTCTCCTCAATTCACCATCAACAACCTTCAAACTACAAAAAGAACAACATCCATTCCCATTTACAACTCCAAAATTCAATCTAAACACATTTACGTTTCTCACCCTTTAGTTTTGTTTAAATCCACAATGCAGGGCCATTCACCTCGTTCCCTTCGCTCCTCTATCAAGAGCTCGTTGATCGACCCCGATGGTGGGGTTATCGTCGACTTGGTTGTGCCTGAGAGTGAAAGGGCCTCGAGGATTTTGGAGGCCGAGCCATTGCCGAAGGTTAAATTGACCCAAATTGATCTAGAATGGGTCCATGTCATTAGTGAAGGATGGGCGAGCCCGTTGAGGGGGTTTATGAGAGAAGATGAGTATTTGCAGAGTTTGCATTTCAATTGCATCAAAATTAAAGATGGGTCTTTGGTAAACATGTCGCTTCCTATTGTTCTTGCCATTGGCGACGATGTTAAGGACCAAATTGGGTCCTCGTCTAATGTGGGGTTGCTTGGTCCCAATGGAGATTTGGTTGGTATTCTTCGCAGCATTGAGATATTCAAGCATAATAAGGAAGAGAGGATAGCTAGAACTTGGGGCACAACTGCACCTGGGTTACCGTATGTTGATGTGGTCATTACAAATGCTGGGAACTGGCTTCTTGGTGGAGATCTTGAAGTAATAAACCCCATCAAATACAATGATGGACTTGATCATTATAGGCTGTCTCCAAAACAACTTCGGCAAGAGTTCGATAGGCGTCAGGCCGATGCTGTTTTTGCCTTTCAATTGAGAAACCCTGTACATAATGGTCATGCTTTGTTAATGAATGATACACGAAAGCGACTTCTAGATATGGGCTACAAGAATCCAATTCTATTGCTTCATCCTTTGGGAGGTTTTACAAAAGCAGATGATGTGCCATTGGATGTTCGAATGGAGCAACATAGCAAGGTTTTAGAAGATGGAGTCCTTGACCCTGAAACGACCATCGTCTCAATTTTCCCGTCACCCATGCATTACGCTGGCCCAACCGAAGTACAATGGCATGCTAAAGCAAGGATCAATGCAGGTGCAAATTTTTACATTGTTGGTCGAGATCCTGCTGGAATGGGTCACCCAACAGAGAAGAGAGATTTATATGATCCCGACCATGGCAAGAAGGTCTTAAGTATGGCCCCTGGCCTTGAGAAGCTAAACATATTACCCTTCAAGGTAGCAGCATACGATACTGTGGCGAAGAAGATGGCGTTCTTCGACCCTTCTCGTGCTAAAGATTTCCTCTTCATCTCTGGAACAAAGGTAAGAGCTAAGTTGAGTTTGGACAGGATGCCATTTCAATCCTGTTGTGACAATAGTAACTGA 1377 43.86 MSLFTKLHIAISPQFTINNLQTTKRTTSIPIYNSKIQSKHIYVSHPLVLFKSTMQGHSPRSLRSSIKSSLIDPDGGVIVDLVVPESERASRILEAEPLPKVKLTQIDLEWVHVISEGWASPLRGFMREDEYLQSLHFNCIKIKDGSLVNMSLPIVLAIGDDVKDQIGSSSNVGLLGPNGDLVGILRSIEIFKHNKEERIARTWGTTAPGLPYVDVVITNAGNWLLGGDLEVINPIKYNDGLDHYRLSPKQLRQEFDRRQADAVFAFQLRNPVHNGHALLMNDTRKRLLDMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFKVAAYDTVAKKMAFFDPSRAKDFLFISGTKVRAKLSLDRMPFQSCCDNSN 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3799418 3802404 + MELO3C003762.2.1 Cme04g00480 324741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00480 458 SUPERFAMILY Nucleotidylyl transferase 243 449 - -
Cme04g00480 458 Gene3D HUPs 238 456 IPR014729 -
Cme04g00480 458 SUPERFAMILY PUA domain-like 73 237 IPR015947 -
Cme04g00480 458 CDD ATPS 98 443 IPR002650 GO:0000103|GO:0004781
Cme04g00480 458 Pfam ATP-sulfurylase 243 449 IPR024951 GO:0004781
Cme04g00480 458 Gene3D Sulfate adenylyltransferase 69 237 - -
Cme04g00480 458 PANTHER ENDOGLUCANASE 65 441 - -
Cme04g00480 458 TIGRFAM sopT: sulfate adenylyltransferase 73 445 IPR002650 GO:0000103|GO:0004781
Cme04g00480 458 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 65 441 - -
Cme04g00480 458 Pfam PUA-like domain 71 233 IPR025980 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00480 K13811 PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase [EC:2.7.7.4 2.7.1.25] - csv:101217416 866.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00480 Cme-Chr4:3799418 Cme06g00566 Cme-Chr6:3572098 0 dispersed
Cme04g00480 Cme-Chr4:3799418 Cme05g00494 Cme-Chr5:4547216 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1086 Blo01g01591 . Bda01g00494 . Bpe02g00356 . . Bma01g02362 . . Cma01g01965 . Car01g01535 . . . . . . . . . . . . . . . . . . . . Cone17ag1393 Cone20ag0087 Lsi04g01731 Csa03g04268 Chy04g00427 . . . . . . . . . Sed01g2503 Cmo01g02023 . . . . . . Cpe02g00078 Bhi09g02099 Tan01g5005 Cmetu04g0401 . Hepe01g1625 Mch11g0129 . Cla05g01885 Cam05g2018 Cec05g2029 Cco05g2086 Clacu05g2009 Cmu05g1890 Cre05g2013 . . . Cme04g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000781 5 3 3 2 3 3 4 3 3 3 2 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 3 3 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00480 Cme_Chr04 FPKM 19.216387 21.816725 61.64999 62.820698 51.006664 48.848976 54.989574 101.886147 102.675171 114.791725