Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00484 ATGTCGGCCGGGCTCGGAAAATGCAGCAAAATCCGCCACATTGTCAGGCTCCGGCAAATGCTACGACGGTGGCGCAACAAAGCTAGAATGTCAGCCAATCGTATCCCTTCCGACGTACCCGCCGGACACGTGGCTGTATGCGTCGGAACAAGCTCGCGGCGGTTCGTTGTCCGTGCCACTTACTTGAACCACCCGGTTTTCAAGAAGCTTCTGATCCAAGCCGAAGAGGAGTATGGGTTCACCAATCAAGGTCCGTTGGCAATCCCTTGCGACGAGTCGGTTTTCGAAGAAGTTATCCGGTTCATCTCTAGATCCGAGTCTCCGAACTCGGGACGGTTCGTGAAATTGGACGATTTTCAAAGTTATTGTCATATCGGAATCAGAACTGGGCTGGATTTGTGGCCGGAATCTCGGCCTTTGCTTCATGGGTTGGCCGAAAAATCCATTTGGTAA 453 52.32 MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSSRRFVVRATYLNHPVFKKLLIQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSESPNSGRFVKLDDFQSYCHIGIRTGLDLWPESRPLLHGLAEKSIW 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3857270 3857722 - MELO3C003765.2.1 Cme04g00484 324745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00484 150 PANTHER SMALL AUXIN-UP RNA-RELATED 6 143 - -
Cme04g00484 150 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 143 IPR003676 GO:0009733
Cme04g00484 150 Pfam Auxin responsive protein 16 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01314 Cme-Chr1:16480066 Cme04g00484 Cme-Chr4:3857270 1.41E-64 dispersed
Cme04g00484 Cme-Chr4:3857270 Cme11g00450 Cme-Chr11:4392377 1.64E-57 dispersed
Cme11g01604 Cme-Chr11:23894664 Cme04g00484 Cme-Chr4:3857270 6.29E-16 dispersed
Cme04g00481 Cme-Chr4:3807881 Cme04g00484 Cme-Chr4:3857270 6.03E-18 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00484 K14488 - csv:101216342 308.916