Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00486 ATGTGCCAAGTTCAAAATGTTACCTTACATGCTGACAAAGATTCAGATGAAATCTATGCTCAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTTTTCCTAGTTCCTGACTTTGGATTAAGGCCAAGTAAACACCCAAATGAGTTCTTCTGCAAAACTTTAACTGCCAGTGACACCAGCACGCACGGTGGGTTCTCAGTGCCACGCAGAGCTGCTGAAAAACTCTTTCCTCCATTGGATTACACAATGCAACCGCCAACTCAGGAGCTCATCGTTAGAGACTTGCATGACAATACCTGGACTTTTCGCCACATATACCGCGGGCAGCCGAAACGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGAGCAAAGAGGCTTAGAGCAGGAGATTCTGTCCTTTTTATAAGGGATGAAAAGTCTCAGTTGCTTATTGGAGTGAGGCGTGCTAACCGGCAACAAACAACATTGCCATCATCGGTTCTATCTGCGGATAGTATGCATATTGGAGTTCTTGCTGCTGCGGCTCATGCTGCTGCTAATCGAAGTCCATTCACAATCTTCTACAACCCCAGGGCATGTCCTTCAGAATTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTCGGGATGATGTTTGAAACAGAAGAGTCTGGTAAACGTCGATATATGGGAACAATTGTTGGAATTAGCGATTTAGATCCACTTAGATGGCCAGGTTCCAAGTGGCGAAATCTTCAGGTAGAGTGGGATGAGCCAGGATGCTGCGATAAGCAGAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTATTCATTTTTCCTTCTCTGACTTCGGGTCTTAAACGTCCATTACACGGTGGATTCTTGGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCAGAAAATATACGTGGGGATCTTTCATATGCCCCAACTTTATGCTCCGAACCACTGATGAAGATGCTACTGAGGCCTCAATTGGTTAACCTTAATGGAACCACCTTACAACAAGATTCAGCTAACAATTTAGTTAAGATACAGGACATGAAGGACATGCAGAATCCCAAAATGCAGCAGCTTATACCGACGGAAACTGCCTCTCCCGGGAATCAAAATCAGCATCATCCAGGACCTGCACAATCTGACCCTATCAGCCCAAATTCATCACCAAAAGCAAATGTACCCGGAAAAATGCACACCTCGGTGGCCATTGGAAGTGAAGCTCCAACTGCAGCTGATGGAGACAAGGCAAAATATGATCGTGACTTGTCAGCCTCAACCCATCAATCCAATCCCTTGCCCCCCGTTGGAGGTTGTGCAGAGGAAAAACTCACCGGTAATGAAGTGAATATGCAAACACTTGTAAACCAGCTTTCGTTTGTGAACCAGAATCAGATTCCCATGGAGTTGCAATCCGTATCATGGCCGATGCAGCCTCAGCTTGAATCACTAATCCAACATCCACAACCAATCGACATGCCTCAGCCTGAATATACGAATTCAAATGGTTTGATTTCATCCTTGGATGGCGATGGATGTTTGATTAACCCATCCTGTCTACCTCTTCCTGGAGTAATGAGATCACCAGGAAATCTTTCCATGTTGGGATTGCAAGACTCCTCAACAGTCTTCCCTGAGGTTCTTAATTTTCCCTTACCTTCAACAGGCCAAGACATGTGGGATCCTCTTAATAATATGAGGTTCTCATCTCAAACCAATCATCTCGTCTCATTCTCTCATGCAGACGCATCTAACCTCAACTGTATGGCCAATGCAAATATTACGAGAGATGTTTCAGATGAAAGCAACAACCAAAGTGGGATATATAGTTGTTCTAACCTTGAAATGAGTAATGGTGGAAGTACTTTGGTTGATCATGCAGTTTCAAGTACCATTCTTGAGGATTATTGTACACTGAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGCTGGAAACTTCAGTTCGAGTCAAGATGTTCAATCTCAGATTACCTCTGCTAGTTTGGGAGATTCTCAGGCTTTCTCCAGGCAAGAATTCCATGATAATTCAGCTGGTACATCCTCATGCAATGTGGACTTTGATGAGGGCAGTCTTCTACAAAATGGTTCATGGAAGCAAGTGGTACCGCCCTTGAGAACTTACACGAAGGTCCAGAAGGCAGGATCCGTTGGGAGATCTATTGATGTCACAAGTTTTAAGAACTACGACGAACTGTGCTCTGCTATCGAATGTATGTTTGGACTTGAAGGGTTGCTTAACGACCCAAGAGGCTCGGGATGGAAGCTGGTTTATGTGGATTATGAGAAGGACGTCCTGCTTATCGGTGATGATCCCTGGGAGGAATTTGTAAGTTGTGTACGCTGCATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGCGAAGAGGGAATGAAACTTCTCAACAGTGCTATGATGCAAGGCATCAATTGCCCCATGTCGGAAGGTGGGCGAGCTTGA 2553 44.73 MCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENIRGDLSYAPTLCSEPLMKMLLRPQLVNLNGTTLQQDSANNLVKIQDMKDMQNPKMQQLIPTETASPGNQNQHHPGPAQSDPISPNSSPKANVPGKMHTSVAIGSEAPTAADGDKAKYDRDLSASTHQSNPLPPVGGCAEEKLTGNEVNMQTLVNQLSFVNQNQIPMELQSVSWPMQPQLESLIQHPQPIDMPQPEYTNSNGLISSLDGDGCLINPSCLPLPGVMRSPGNLSMLGLQDSSTVFPEVLNFPLPSTGQDMWDPLNNMRFSSQTNHLVSFSHADASNLNCMANANITRDVSDESNNQSGIYSCSNLEMSNGGSTLVDHAVSSTILEDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSAGTSSCNVDFDEGSLLQNGSWKQVVPPLRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYEKDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCPMSEGGRA 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3889065 3894392 + MELO3C003768.2.1 Cme04g00486 324747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00486 850 MobiDBLite consensus disorder prediction 384 463 - -
Cme04g00486 850 Pfam Auxin response factor 177 260 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme04g00486 850 Gene3D - 49 152 IPR015300 -
Cme04g00486 850 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 840 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme04g00486 850 SMART B3_2 51 153 IPR003340 GO:0003677
Cme04g00486 850 ProSiteProfiles PB1 domain profile. 736 820 IPR000270 GO:0005515
Cme04g00486 850 Gene3D - 733 825 - -
Cme04g00486 850 CDD B3_DNA 50 151 IPR003340 GO:0003677
Cme04g00486 850 SUPERFAMILY CAD & PB1 domains 738 815 - -
Cme04g00486 850 MobiDBLite consensus disorder prediction 384 417 - -
Cme04g00486 850 ProSiteProfiles B3 DNA-binding domain profile. 51 153 IPR003340 GO:0003677
Cme04g00486 850 Pfam B3 DNA binding domain 51 152 IPR003340 GO:0003677
Cme04g00486 850 Pfam AUX/IAA family 780 823 IPR033389 -
Cme04g00486 850 SUPERFAMILY DNA-binding pseudobarrel domain 38 180 IPR015300 -
Cme04g00486 850 Gene3D - 215 287 - -
Cme04g00486 850 PANTHER AUXIN RESPONSE FACTOR 5 1 840 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00486 Cme-Chr4:3889065 Cme05g02083 Cme-Chr5:29030924 1.49E-37 dispersed
Cme08g01661 Cme-Chr8:18129226 Cme04g00486 Cme-Chr4:3889065 5.18E-18 dispersed
Cme04g00486 Cme-Chr4:3889065 Cme08g00111 Cme-Chr8:821892 3.52E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41152 PF02362 B3 9.80E-21 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00486 K14486 - csv:101216825 1706.03