Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00496 ATGTATGTCTATTTCTCCCACAAACAACAACAACAACAACAACAAGAAAGAAGAAGAAGAAGAAGAAAAAGCAAAAATATGGCTCGTGGGAAGATCCAGATCAAGAGAATAGAAAACCCTACAAACAGGCAAGTGACTTACTCTAAGAGACGCAACGGGCTCTTCAAGAAAGCCAACGAACTGACGGTTCTCTGCGATGCTAAAGTCTCCATTATCATGTTTTCCAGCACAGGAAAACTCCATGAGTATATCAGCCCTGCCACTTCGACTAAGGAGCTTTTCGATCAGTACCAGAAGACTTTAGGCGTCGATTTATGGATCTCTCACTATGAGAGAATGCAAGACAATCTCAAGAAGCTCAAAGATATCAATCGAAATCTCCGAAGGCAGATTAGGCAGAGGATGGGGGAATGTATGAATGATCTGAGTTTTGAAGAACTCCGATGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATCTCAAACCAGATTGAAACACACAAGAAGAAGTTAAAGAGCGTAGGAGAAATACACAAGAGTCTTCTACAAGAGTTCGACATTGCAACTGAAGAAGATCCACATTATGGGCTGGTAGACAATGGAGGAGTAGGTGTAGGAATTGGAGGAGGAGATTATGAGTCAATTATGGGGTTCTCAGGTGCTGCCCATCCTCGCATTTTTGCATTGCGTCTCCAGCCCAACCACAACCACAACAACCATCTTAATAATATTCATCTTCATAACCCTCCTCCTTCAGATCTCACTACCTATCCATTCCTTGAGTAG 813 42.8 MYVYFSHKQQQQQQQERRRRRRKSKNMARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWISHYERMQDNLKKLKDINRNLRRQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGVGIGGGDYESIMGFSGAAHPRIFALRLQPNHNHNNHLNNIHLHNPPPSDLTTYPFLE 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3972168 3976511 - MELO3C003778.2.1 Cme04g00496 324757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00496 270 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
Cme04g00496 270 CDD MADS_MEF2_like 28 106 IPR033896 GO:0000977|GO:0045944
Cme04g00496 270 Pfam K-box region 108 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme04g00496 270 Gene3D - 39 105 IPR036879 GO:0003677|GO:0046983
Cme04g00496 270 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
Cme04g00496 270 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Cme04g00496 270 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Cme04g00496 270 Coils Coil 110 137 - -
Cme04g00496 270 MobiDBLite consensus disorder prediction 251 270 - -
Cme04g00496 270 SUPERFAMILY SRF-like 29 121 IPR036879 GO:0003677|GO:0046983
Cme04g00496 270 MobiDBLite consensus disorder prediction 14 30 - -
Cme04g00496 270 ProSitePatterns MADS-box domain signature. 29 83 IPR002100 GO:0003677|GO:0046983
Cme04g00496 270 PANTHER APETALA3 27 248 - -
Cme04g00496 270 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 248 - -
Cme04g00496 270 MobiDBLite consensus disorder prediction 1 31 - -
Cme04g00496 270 ProSiteProfiles K-box domain profile. 110 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme04g00496 270 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677|GO:0046983
Cme04g00496 270 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00496 Cme-Chr4:3972168 Cme07g00807 Cme-Chr7:7608414 2.05E-42 dispersed
Cme04g00496 Cme-Chr4:3972168 Cme11g02532 Cme-Chr11:31767647 1.98E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41153 PF01486 K-box 4.40E-22 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00496 K09264 - csv:101218008 437.573