Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00500 ATGACGGAGTTGTTCTATTTAGATCGGAAGCAAGAAGATGATCCAGAAAATCAAAGAACAAGATCAGAACAGCAGTTGTTTTTGTATAATGGTAGATCAAATAATCCACAACAGATCTACTCCAAAGAATTCCAGATATGGCCGCAGTACTATTCTCACAACCATCATCTTCCAAACCAAAATGTTGAGAATTACATTTCCTTTGGTGTGGGGCCTAGTAGAAGATCCAGCTTGATGATCAATGCCTTTGATCATGACTTTGTTTCGAGATCAGGGTTTACGATGACGAGACATAGTGGCGGAGGAGGTGGCGGTGGGATGAATTGTCAAGATTGTGGGAATCAAGCTAAGAAGGATTGTTCCCATTTGAGATGTAGGACTTGTTGTAAGAGTCGAGGGTTTCATTGTCAAACTCATGTCAAAAGTACTTGGGTTCCAGCTGCAAAACGTCGTGAACGACAACAACAACGTCATCAACAATTACGAGCGGATCAATCTTCAGATCAGACTGTTCCCAAAATTCATAGAGCAAATCAACCGTCTCTCACTCCTACTATCACTTCAGGGTTAGAACTTGGAAACTTTCAAGGTGAATTCAATTCGTCAGCTGTTTTTCGATGCGTCAAAGTTAGCGCGATTGACAATGTAGAAGAACAATTAGCATATCAAACAGCAGTGAACATTGGTGGACATATGTTCAAAGGAATTCTTTACGACCAAGGTCCAGAAAACAACCAAATTAATTTGAGCTCAGGCGGTGACGGAGAAAATGATGGGCAAGGGCTAGATTTGGTGATCGGAGCATCAAACTGCAGTGGGAGAGTGAATAACCAATCCACTCCATTTGTGGAATCTTCATTGTATCCCATCCCAATCAACTCATTCAACAACTGTACGCAATTTTTCCCTTCTTCTAGAACATGA 924 41.23 MTELFYLDRKQEDDPENQRTRSEQQLFLYNGRSNNPQQIYSKEFQIWPQYYSHNHHLPNQNVENYISFGVGPSRRSSLMINAFDHDFVSRSGFTMTRHSGGGGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHQQLRADQSSDQTVPKIHRANQPSLTPTITSGLELGNFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPENNQINLSSGGDGENDGQGLDLVIGASNCSGRVNNQSTPFVESSLYPIPINSFNNCTQFFPSSRT 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4044534 4046000 + MELO3C003781.2.1 Cme04g00500 324761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00500 307 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 304 - -
Cme04g00500 307 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 195 242 IPR006511 -
Cme04g00500 307 MobiDBLite consensus disorder prediction 160 185 - -
Cme04g00500 307 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Cme04g00500 307 MobiDBLite consensus disorder prediction 147 185 - -
Cme04g00500 307 Pfam Domain of unknown function (DUF702) 106 243 - -
Cme04g00500 307 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 304 IPR007818 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01908 Cme04g00500 CCT
Cme03g01908 Cme04g00500 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00500 Cme-Chr4:4044534 Cme07g01691 Cme-Chr7:22460299 4.07E-51 dispersed
Cme01g00284 Cme-Chr1:2128582 Cme04g00500 Cme-Chr4:4044534 1.79E-120 transposed
Cme03g01908 Cme-Chr3:27196012 Cme04g00500 Cme-Chr4:4044534 1.01E-91 wgd
Cme04g00500 Cme-Chr4:4044534 Cme08g00899 Cme-Chr8:5915372 7.34E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41154 PF05142 DUF702 2.50E-59 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00500 - - csv:101218246 539.65