Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00507 ATGGATAGAAAGTCCAGAACTAATAACAACGTTGCTCAAGCCAGCTCCCGCAAGGGCTGCATGAGAGGCAAAGGCGGACCAGACAACGCTTCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTCGCCGAAATTCGCGAACCCAACCGTGGTGCTCGTCTCTGGCTTGGCACCTTCGACACTGCCCATGAAGCCGCTCTTGCTTACGACGCTGCTGCTCGCAAACTCTACGGCTCCGAAGCTAAGCTTAATCTCCCCCAAACTACTACTACTCCTCATGAATTACCTCAATTGGAACACGGCGGTCAGTCTCCTTCTAATAATAATATTATTGCTTCTCCGTCTCCAACCTCTTCGACAACAACGATGTCCTCATCTCCGATAGAGCGAATTGGCGGGCTCTGGGAAAATGAGAACGTCAATTTTGATGAGTCGATATGGAGAGAGGCTGTGATGTCTTTGGATTTTCCTATTATCGAAGATGATCAAGGGATTTTCTTCGATGGGGCTGGAAGTTGGGACACTTTGCAGTGGTGCATGTGA 555 49.91 MDRKSRTNNNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGSEAKLNLPQTTTTPHELPQLEHGGQSPSNNNIIASPSPTSSTTTMSSSPIERIGGLWENENVNFDESIWREAVMSLDFPIIEDDQGIFFDGAGSWDTLQWCM 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4159145 4159699 - MELO3C003785.2.1 Cme04g00507 324768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00507 184 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Cme04g00507 184 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Cme04g00507 184 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Cme04g00507 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 131 - -
Cme04g00507 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 132 181 - -
Cme04g00507 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 132 181 - -
Cme04g00507 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 9 131 - -
Cme04g00507 184 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Cme04g00507 184 MobiDBLite consensus disorder prediction 1 27 - -
Cme04g00507 184 MobiDBLite consensus disorder prediction 90 131 - -
Cme04g00507 184 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Cme04g00507 184 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Cme04g00507 184 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Cme04g00507 184 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01916 Cme04g00507 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00507 Cme-Chr4:4159145 Cme08g02169 Cme-Chr8:27722698 2.77E-34 dispersed
Cme03g01916 Cme-Chr3:27268146 Cme04g00507 Cme-Chr4:4159145 5.57E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41155 PF00847 AP2 2.20E-15 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00507 - - csv:101204876 332.028