Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00509 ATGGTATCAATTCTTTCTCTTCCATCTTCTTCCTCGTATGTTGTTCATGACAGAAGTTTCTCCTTTAGCTTCTTCCCCAAGAGGTGTTACCGAAACAGAGGTTTCACTGGGAATTCGAGCTACTGCTCAATTAAGTGCAAATTAGCTAGGGTCGTAGATTCTTCCGCCAACCCAGCTACATTGACAAAGGAAGCTCATAAGTATTTTGATCAGGCTATTATAACAGTTCGTTCAGGAGATGGAGGCCATGGTACAGTTCTTAGCATGCCTAGTCAACAAACGAGCAAGTCCCAAGGAAGAAATGGGAAGGAGAAGGAGAAGGCGAAGAAGAAAAGTTTGTACAAAAGGGACTTTGATGGGTCTCTAATTCTTCCCATGGGTGGACGCGGTGGAGACGTGGTAATTTATGCCGATGAAGGGAAAGACTCGCTGCTGGAGTTTCATACCAAGAGCCGGTATAATGCAAAACGTGGTGGCAATGTTGATGCAATGGGCGTTTTGACCTCCCAATTGCATAATGGATTTGCTGCCCCTACTCTGCGTATTCCGGTTCCTATAGGTACTGTTGTAAAACGTAAAAGAGGAAAATTGTTAGCTGATCTGGTTCATCCTGGCGACGAGATTCTTGTAGCTAGAGGAGGACAAGGAGGGATAAGCTTGATTGATACACCGGAGAACAGAAGGAAAAAGATGATGTCCCTGACCTCCAATGTGATGAGAGATGAAAGTGATAAGGTTCTGGTTTTTGGTCAGCCTGGGGAAGAGGTCAGTTTGGAGTTGATTCTTCGAGTAGTTGCCGATGTTGGACTGGTGGGCTACATTTCAGAAATGAAAGGGTGGTTCGTCAAACCATTTGGACTTCCCAATGCTGGAAAATCAACACTTCTTGCAGCCATTACGCTTGCAAAACCTGATATTGCAGACTATCCTTTCACTACTTTAATTCCAAACCTTGGACGCCTTGATGGCGATCCCAGTTTAGGAGCAGGAATGTATCAATCTGAAGCTACTTTAGCTGATTTACCTGGTCTTATAGAAGGTGCTCATTTGGGTAAGGGCCTTGGTCGCAACTTCCTGAGACATCTGAGAAGGACCCGGCTGTTGGTTCATGTTGTCGATGCAGCTGCAGAGAACCCTGTCGATGATTATAGGACTGTGAGAGAAGAATTGCGGATGTACAATCCTAATTACCTTGGAAGACCATATGTTGTGGTGCTAAATAAGATTGACCTTCCTGAGGCCAAAAATAGGCTTCCATCCGTAACTGAAGAAATCTTGAGAATTGGAACTGACGATCGTTATCCTGAGCAAATGGGATCTGAAAACAGTGTACAATCATCAGTTCTAGAAGACGATCTTGCAACTGTTTCGTCTTTGGAAATTCCAGTTGCTGATGAAAAGGATAAAGAGATTGAAGACTATCCTCGTCCTCTTTCAGTCGTAGGCGTTAGTGTTCTGAAAGGTATCAATATAAGTTTAATGTTGAAAGAGATTCGAGCAGCATTGAGGAAGTGTAGAGATCCCGAAGGCATGTCGATGAATGCAGGTGGTTAA 1554 43.95 MVSILSLPSSSSYVVHDRSFSFSFFPKRCYRNRGFTGNSSYCSIKCKLARVVDSSANPATLTKEAHKYFDQAIITVRSGDGGHGTVLSMPSQQTSKSQGRNGKEKEKAKKKSLYKRDFDGSLILPMGGRGGDVVIYADEGKDSLLEFHTKSRYNAKRGGNVDAMGVLTSQLHNGFAAPTLRIPVPIGTVVKRKRGKLLADLVHPGDEILVARGGQGGISLIDTPENRRKKMMSLTSNVMRDESDKVLVFGQPGEEVSLELILRVVADVGLVGYISEMKGWFVKPFGLPNAGKSTLLAAITLAKPDIADYPFTTLIPNLGRLDGDPSLGAGMYQSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPVDDYRTVREELRMYNPNYLGRPYVVVLNKIDLPEAKNRLPSVTEEILRIGTDDRYPEQMGSENSVQSSVLEDDLATVSSLEIPVADEKDKEIEDYPRPLSVVGVSVLKGINISLMLKEIRAALRKCRDPEGMSMNAGG 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4189972 4194181 - MELO3C003786.2.1 Cme04g00509 324770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00509 517 Pfam GTP1/OBG 127 263 IPR006169 -
Cme04g00509 517 ProSiteProfiles Obg domain profile. 66 265 IPR006169 -
Cme04g00509 517 ProSitePatterns GTP1/OBG family signature. 340 353 IPR006074 GO:0005525
Cme04g00509 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 504 IPR027417 -
Cme04g00509 517 PRINTS GTP1/OBG GTP-binding protein family signature 355 373 IPR006073 GO:0005525
Cme04g00509 517 PRINTS GTP1/OBG GTP-binding protein family signature 282 302 IPR006073 GO:0005525
Cme04g00509 517 PRINTS GTP1/OBG GTP-binding protein family signature 303 321 IPR006073 GO:0005525
Cme04g00509 517 PRINTS GTP1/OBG GTP-binding protein family signature 338 353 IPR006073 GO:0005525
Cme04g00509 517 Gene3D GTP1/OBG domain 67 264 IPR036726 -
Cme04g00509 517 Pfam 50S ribosome-binding GTPase 285 408 IPR006073 GO:0005525
Cme04g00509 517 Gene3D - 285 509 IPR027417 -
Cme04g00509 517 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 44 508 - -
Cme04g00509 517 MobiDBLite consensus disorder prediction 84 111 - -
Cme04g00509 517 SUPERFAMILY Obg GTP-binding protein N-terminal domain 68 231 IPR036726 -
Cme04g00509 517 CDD Obg 266 418 IPR031167 GO:0005525
Cme04g00509 517 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 280 503 IPR031167 GO:0005525
Cme04g00509 517 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 44 508 IPR045086 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00509 - - - csv:101218721 928.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00509 Cme-Chr4:4189972 Cme06g00707 Cme-Chr6:4596742 7.83E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00466 . Blo17g00770 . Bda08g01253 . . . . . . . . . . . . . . . . . . . . . Cla05g01905 Cam05g2042 Cec05g2050 Cco05g2105 Clacu05g2034 Cmu05g1913 Cre05g2035 . . . Cme04g00509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00509 Cme_Chr04 FPKM 2.319902 1.989481 0.578304 0.687724 5.544534 4.695668 5.893239 0.703886 0.658275 0.703113