Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00516 ATGGCGGAAAAGAGCCAAGTGATTACGTGCCATACCGTTCAATCATGGAAGCAGCAGCTCCTCAAAGGGAAACAATCTGATAAATTGATTGTCGTGGACTTCACCGCTGCATGGTGCGGTCCGTGCCGTGCCATTGCTCCGGTTTTTGTAGAGCTGGCTGAGAAGATGAGTAATGTCATTTTCTTGAAGGTCGACGTTGATAAATTGACTACTGTTGCTGCGGAATGGGGAGTGAGTGCACTACCTTGTTTCATGTTCTTGAAGAATGGGAATGTGGTGGATAGGTTTGTAGGTGCAAGAAAAGATGCATTGCGGAAGCTCGTATTACACCATGCCTAA 339 46.61 MAEKSQVITCHTVQSWKQQLLKGKQSDKLIVVDFTAAWCGPCRAIAPVFVELAEKMSNVIFLKVDVDKLTTVAAEWGVSALPCFMFLKNGNVVDRFVGARKDALRKLVLHHA 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4248737 4250256 + MELO3C003791.2.1 Cme04g00516 324777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00516 112 Pfam Thioredoxin 9 107 IPR013766 -
Cme04g00516 112 PANTHER THIOREDOXIN 1 112 - -
Cme04g00516 112 SUPERFAMILY Thioredoxin-like 5 110 IPR036249 -
Cme04g00516 112 Gene3D Glutaredoxin 1 112 - -
Cme04g00516 112 CDD TRX_family 25 108 - -
Cme04g00516 112 PANTHER THIOREDOXIN 1 112 - -
Cme04g00516 112 PIRSF Thioredoxin 5 112 IPR005746 GO:0015035
Cme04g00516 112 PRINTS Thioredoxin family signature 30 38 - -
Cme04g00516 112 PRINTS Thioredoxin family signature 38 47 - -
Cme04g00516 112 PRINTS Thioredoxin family signature 77 88 - -
Cme04g00516 112 ProSiteProfiles Thioredoxin domain profile. 1 112 IPR013766 -
Cme04g00516 112 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00516 K03671 trxA; thioredoxin 1 - csv:101219430 217.624
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01919 Cme04g00516 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01919 Cme-Chr3:27287107 Cme04g00516 Cme-Chr4:4248737 1.34E-39 dispersed
Cme04g00516 Cme-Chr4:4248737 Cme10g00993 Cme-Chr10:7863735 4.80E-50 dispersed
Cme03g01536 Cme-Chr3:24494623 Cme04g00516 Cme-Chr4:4248737 5.65E-13 transposed
Cme08g00520 Cme-Chr8:3225436 Cme04g00516 Cme-Chr4:4248737 4.75E-07 transposed
Cme12g01980 Cme-Chr12:25588365 Cme04g00516 Cme-Chr4:4248737 7.08E-12 transposed
Cme03g01918 Cme-Chr3:27281405 Cme04g00516 Cme-Chr4:4248737 9.09E-36 wgd
Cme04g00516 Cme-Chr4:4248737 Cme08g00895 Cme-Chr8:5876569 7.33E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1015 . . . . . . . . Cmo05g00277 Cmo12g00390 . . . Car12g00416 . . Cpe07g00394 Bhi04g00209 . . . Hepe10g0604 . . Cla08g01456 Cam08g1941 Cec08g1515 Cco08g1654 Clacu08g1631 . Cre08g1417 . . . . . . Chy04g00470 Cme03g01919 . . . . . . . . . . . Cma12g00439 . Car05g00225 . Cpe11g00225 . . . . . . . . . . . . . . . Lsi08g01362 Csa02g02092 Chy03g01423 Cme04g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000895 2 4 1 1 1 4 3 4 4 4 2 4 3 3 4 3 4 3 3 4 4 2 2 3 2 3 3 6 2 0 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00516 Cme_Chr04 FPKM 1.260498 1.043482 0.999534 0.938695 1.526049 1.876992 1.534562 0.604344 0.704774 0.578809