Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00527 ATGGAGTCTACTGCTAATCTCAATCACCACCAGCATCAGCTTCAAGATCACCAGCTGCTTCTTGCTTCTTCTTCTTCTTCCTCCTCTTTGTCCGTTGTTCCTTCTTATTTTGGCCTTGGAACTGCCTGGTCTTCTAATATATCTCTGAATAGTAATAATACTTGCAACGTCTACAATAACCCAACAATATTCAATGGAGAAGTAACAACAACTAATTCTTCACATCCAATTAGATCATCAGATTGTGAGCAGAAAAACACAAACAGTACTTCTTCAATAATGCTTCAAGATTTGGGTAATTATGATCAATGGAATAATAATAATGGTGATAATGTTGTAAATACAGGTAATAATAATTTTTTCACTCAATCTCTCCATCATAACCAACAACAAATCTCCTCATCCACACCTCCAACAACTCCTCCTCCTCCTCCTCCTCCTCCTCATCAATCTTTCCCCAAATTCACAGAAATCTTGAACAACAACAACATTACAAATATTCAAGATTTCATCAATATTAATAGCAACAATGATTCAGATCTCAATGACCTCACTCACAAGCTCTTGATCAAAACCCTCATTTCATCCGGCTGTCAAATCAACGGTGCTGATCACCCCATCATTTCAAGATCAAGTAATAATAATAGACCAGCTCCCCATTTCCCTCAAATTTACCCTAGTATTAATGTCTCTAATTGGAATATCTCATCTCCGTCGCCACCGCCACCTTCGTTCTCAAATTCCTTAGATTTGAACTTACAAACGCCCACCGATATGTTGGTTGGAAATTTCAGCCAGAATAATTTCGGTATTTTTAAAGAAGCACTCTCCGATTTTGGCGATCAGATTCGAGAATCTCCGCCGACGGGCAGCCTCCCATGCATTATTCCAAGTAAAATGACAACATTTAGCAGTACTGAAGTATGTAAACCAAAACGAGGTTGTAATTCCATGGAGTCAAGGTTGAATCAACAATCTCCTCTTAAGAAATCGCGATTGGATTCACGCGCTTCTTGCCCACCATTTAAGGTTAGAAAGGAGAAATTGGGTGATAGAATTGCAGCACTTCAACAATTGGTTGCACCCTTTGGGAAGACAGACACAGCATCTGTGTTAATGGAAGCCATTGGTTACATCAAATTTCTTCAAAATCAGGTTGAGACATTGAGCGTTCCATACATGAAACCCGCCGGCAGCAACAAAGCCCCTCAGCCCACACATCGGAGTTCGGTGGAGGACGGAAATGAAGGTGGGCAAAATCGAGATCTCAGAAGTAGAGGGCTGTGTTTGGTTCCATTGGGGTGCTTGTCTTACGTGACCGGCGACGGGGGCGGTGGCGTCGGAATTTGGCCGCCACCAGGGTTTAATGGAGGAACTTCTTAA 1383 41.58 MESTANLNHHQHQLQDHQLLLASSSSSSSLSVVPSYFGLGTAWSSNISLNSNNTCNVYNNPTIFNGEVTTTNSSHPIRSSDCEQKNTNSTSSIMLQDLGNYDQWNNNNGDNVVNTGNNNFFTQSLHHNQQQISSSTPPTTPPPPPPPPHQSFPKFTEILNNNNITNIQDFININSNNDSDLNDLTHKLLIKTLISSGCQINGADHPIISRSSNNNRPAPHFPQIYPSINVSNWNISSPSPPPPSFSNSLDLNLQTPTDMLVGNFSQNNFGIFKEALSDFGDQIRESPPTGSLPCIIPSKMTTFSSTEVCKPKRGCNSMESRLNQQSPLKKSRLDSRASCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQNQVETLSVPYMKPAGSNKAPQPTHRSSVEDGNEGGQNRDLRSRGLCLVPLGCLSYVTGDGGGGVGIWPPPGFNGGTS 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4501055 4505049 + MELO3C003797.2.1 Cme04g00527 324788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00527 460 MobiDBLite consensus disorder prediction 316 336 - -
Cme04g00527 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 395 IPR036638 GO:0046983
Cme04g00527 460 MobiDBLite consensus disorder prediction 136 152 - -
Cme04g00527 460 PANTHER OS01G0105700 PROTEIN 161 442 - -
Cme04g00527 460 MobiDBLite consensus disorder prediction 394 422 - -
Cme04g00527 460 CDD bHLH_AtbHLH_like 340 390 IPR045239 -
Cme04g00527 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 382 IPR011598 GO:0046983
Cme04g00527 460 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 161 442 - -
Cme04g00527 460 MobiDBLite consensus disorder prediction 316 332 - -
Cme04g00527 460 MobiDBLite consensus disorder prediction 126 155 - -
Cme04g00527 460 Gene3D - 343 395 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00527 - - - csv:101205604 680.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01932 Cme04g00527 CCT
Cme03g01932 Cme04g00527 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00527 Cme-Chr4:4501055 Cme08g00357 Cme-Chr8:2256998 1.36E-32 dispersed
Cme10g01341 Cme-Chr10:15349540 Cme04g00527 Cme-Chr4:4501055 8.67E-23 dispersed
Cme03g01932 Cme-Chr3:27376191 Cme04g00527 Cme-Chr4:4501055 2.22E-42 wgd
Cme04g00527 Cme-Chr4:4501055 Cme08g00886 Cme-Chr8:5813284 1.20E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g990 . . . . . . . . . Cmo12g00398 Cma01g01931 Cma09g00137 Car01g01507 Car12g00423 . Cpe06g00096 Cpe07g00402 . . . . . . . Cla08g01466 Cam08g1954 Cec08g1529 Cco08g1667 Clacu08g1644 . Cre08g1429 . . . Cone20ag0124 Lsi04g01698 Csa03g04238 Chy04g00477 Cme03g01932 . Blo18g00805 . Bda01g01505 Bpe02g01703 . . . . Cmo01g01994 Cmo09g00133 Cma12g00448 . . Car09g00123 . Cpe02g00107 . . . . . . . Cla05g01913 Cam05g2051 Cec05g2062 Cco05g2115 Clacu05g2046 Cmu05g1922 Cre05g2045 Lsi08g01375 Csa02g02076 Chy03g01437 Cme04g00527
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004725 1 4 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00527 Cme_Chr04 FPKM 14.842478 15.445629 11.130498 12.362715 17.600384 16.005428 18.505524 10.720613 10.254544 11.072774