Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00545 ATGGCAGCCGCTTGCTCTCACTCCACTATTCCATCGCATAAACACTCCCTCTCTACTCACTTCTACTCCACCAAGTCTCTTCCACGATCGGTGAAGTTTTTTGGCGACGTTTCGGGCTTTGCTCTCCCTACTCCCTCTAGGTTTCCTCTTCGTTTTCCTTCAATCTCTTGCCAGACCTCTGCCACTTCTCCTCCTTCCCTCGCATCCAAAGTGAAAACAGAGAAGAAGGATTTCCTTCACCTCAGCGATTTTGATAAATCCACCCTCTTGAAGATCTTAGACCGTGCGGTTGAAGTTAAGGCGCAACTGAAATCTGGTGATAGGTCATTTCTCCCATTTAAAGGGAAGACAATGGCGATGATCTTTGCAAAACCATCCATGAGAACCAGAGTTTCATTTGAGACTGGTTTCTTCTTGCTAGGGGGCCATGCCATATATTTAGGGCCCGACACCATCCAAATGGGTAAAAGAGAGGAAACTAGGGATATTGCTCGTGTTTTGTCTCGCTATAATGATGTCATAATGGCCCGTGTTTTTGGTCACCAGGATATTCTTGATTTAGCTAAATATTCCACCGTGCCTGTAATAAATGGTCTGACGGATTACAACCATCCATGTCAAGTAATGGCCGATGCACTCACTATGATTGAACACATTGGCAAGTTAGAAGGAATTAAGGTCGTGTATGTTGGAGATGGAAATAACATGGTGCATTCATGGTTGTTGTTGGCATCAGTTGTACCCCTCCACTTTGTTTGTGCGTGTCCTAAAGGTTTTGAGCCAGATAAGAATACAGTTGAAAAGGCCCGACAAGCTGGAGTTAGCAAGATTGAGATTACTCATGATCCCAAGGAAGCAGTGAAAGGAGCTGATGTTGTATACTCAGATGTCTGGGCCAGCATGGGACAAAAAGAGGAGGCTGATTATCGGCGTCAAGTGTTTCAAGGCTTCCAG 954 45.18 MAAACSHSTIPSHKHSLSTHFYSTKSLPRSVKFFGDVSGFALPTPSRFPLRFPSISCQTSATSPPSLASKVKTEKKDFLHLSDFDKSTLLKILDRAVEVKAQLKSGDRSFLPFKGKTMAMIFAKPSMRTRVSFETGFFLLGGHAIYLGPDTIQMGKREETRDIARVLSRYNDVIMARVFGHQDILDLAKYSTVPVINGLTDYNHPCQVMADALTMIEHIGKLEGIKVVYVGDGNNMVHSWLLLASVVPLHFVCACPKGFEPDKNTVEKARQAGVSKIEITHDPKEAVKGADVVYSDVWASMGQKEEADYRRQVFQGFQ 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4776566 4779680 + MELO3C003814.2.1 Cme04g00545 324806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00545 318 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 122 141 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cme04g00545 318 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 204 215 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cme04g00545 318 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 8 318 - -
Cme04g00545 318 Gene3D Aspartate/ornithine carbamoyltransferase 76 206 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cme04g00545 318 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, CHLOROPLASTIC-LIKE 8 318 - -
Cme04g00545 318 Gene3D Aspartate/ornithine carbamoyltransferase 207 318 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cme04g00545 318 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 75 318 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cme04g00545 318 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 223 318 IPR006131 GO:0006520|GO:0016597|GO:0016743
Cme04g00545 318 PRINTS Ornithine carbamoyltransferase signature 193 207 IPR002292 GO:0016743
Cme04g00545 318 PRINTS Ornithine carbamoyltransferase signature 293 303 IPR002292 GO:0016743
Cme04g00545 318 PRINTS Ornithine carbamoyltransferase signature 120 134 IPR002292 GO:0016743
Cme04g00545 318 PRINTS Ornithine carbamoyltransferase signature 153 166 IPR002292 GO:0016743
Cme04g00545 318 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 76 217 IPR006132 GO:0006520|GO:0016743
Cme04g00545 318 TIGRFAM orni_carb_tr: ornithine carbamoyltransferase 76 318 IPR002292 GO:0016743
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00545 K00611 OTC, argF, argI; ornithine carbamoyltransferase [EC:2.1.3.3] - csv:101222023 605.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00545 Cme-Chr4:4776566 Cme06g02855 Cme-Chr6:35997660 2.89E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g970 Blo01g01571 . Bda01g00522 . Bpe02g00382 . . Bma01g02329 . . Cma01g01919 Cma09g00147 Car01g01500 . . Cpe06g00103 . . . . . . . . . . . . . . . . . . Cone20ag0133 Lsi04g01689 Csa03g04229 Chy04g00486 . . . . . . . . . . Cmo01g01982 Cmo09g00145 . . . Car09g00131 . Cpe02g00117 . . . . . . . Cla05g01923 Cam05g2060 Cec05g2073 Cco05g2124 Clacu05g2054 Cmu05g1931 Cre05g2054 . . . Cme04g00545
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00545 Cme_Chr04 FPKM 0.0 0.0 0.102899 0.064911 2.495674 2.531515 2.93026 0.026566 0.067541 0.071159