Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00546 GACGGTTACTCTCTCCGGCTCCCGACCACCTTCCTCCGCCACCGCCGCTCACTCAACCACCCCTTCCCTTGTTTAGTCACCAAAAAGACCGGAGGGAGAAGAAAATCAGGAACTGAGAAATCTCGTCGGACCCTGAACCTTCTGCCTTCCTCTATGGAGTATCGAGCGTCGTCAACTGTCTACAACAAGTTTTCAAATGCTCGTGGTTTCAACGATAAATCGGTGTACGATGGCGTCTTTGCTGCTCCGTCGAAGCACGGAGCTCCGGTCTTCTCTGCTCGAGTTGAGGACTACAGAGAGATTTTTGGCGGTTCGCGAGTTTCTTCGATTCCGATTCTCGACGTTCCGGCACTGAGCGATAAGAAGTTTCCGGTTGATGTTCGTACCTCGAAAGTTGAATATTCCAAGATTTTTGGTGGCTTTGATGAGTTAAATTTCGCCATACCTTATGAGGAGCTTCTGGTGGAGGCAAACAAAACAAACTCGTTTTCTCAGAAATCTCGGATCTCAGCTGGAAGAGGATCCACGGCATCTCAAAATCCTTCTCAGTATGAAAAGGAAAGTAACTTTTCCACCCGTGAAGCATCATCTCAACCACTTGATAAAATGGAGAAATTCAGCGTGTCCTATCAAAAGATCAACCAAGGAAACAAAAGTTATGCTACGGAGACAGCTCATGTAGCTCTTCCCCATGCCATTCCAGGTTTTTCATGTGTAATTGATCAACAATTTCCTGTACAGATGTCTGGAACTGGTATGCCATCGTCCGAAAAATTGAATAATATTCGCACAGAAAACATTGGGAGTACTGAAGTCACAGATAAGTCTGAGCGTCCAATTTCTAGTGATAGTGAACAGGTATTTAAGGCAAGTAATCCAACCAATTCTCAGAGCAGAACTGGGTGGTTTAGATCAGATTCAGCTGATAAGTTATTCAATGGGTATGCGGTGGATCAAGGGGTACAGAACCCTGACACTCCACCAAAATGTAATTTTCTGCCTAAGTTTGGTAAAAGTGCGGGATTTTCAGGGAGAGAAACTGGTTTAAAGTCTGAAGCATTTGAACATTCTGAAGATCCTTGTGACGGTTCTTCACCGCCATACTTTGGTGAGGATGTGGAGGTGAATCCAGTTGCTGCTGCCTCTGTTGCAGCTTTGAGAAAAGCAATTGATGCTGCTCAGGAGAGCATAAAAATTGCTAAGGAGTCTATGGAAAGAAGGAAAACTGCCGGACTTCAAAAACACAAAAAAACAAGGTCTTCTAGGAGGCTAACTTCTGAAGAGAAAAGGGAAGTAAAAACTTCAAACAATTCAGGCACATGCCAAGAGATGGTGGCTGGGGAAACTTGTGGAAAAGTGAATACTTTGGAACAAGCGGTTGCTGAAATCAGGAGACAGAATTCAACTACAGAAGAATGTCCTGTCACTCAAAGTGCAGTGAGGGAAAATTTAAATGCCGCAGGAACAAATGATATGGAATTTAAGATGTCAGAAGTTGATTGTAGGGAGGAAGAGGGTGAAGAATTAGATGCAAAAGAACAATTTTATGAACCTAGGTCTTTTGGTGAAGACGAGGCAGAAGAACTGGAACCTGTCAAGGAACACAATGCAGATGGATATGAATGGCAAGGAAACAATGGGTTGAAGAAAACATTTGAGAATCCTGGAGAGTCTAATGATAGCTTGGTTGTGGTCAAAGAGGCTGGACTGGAGGAAGGTGGCATAAACTTAAGTGTAGTCAAAGGCATTCTTATGAGCAAATTAAAGTCAGTTCTAGGTGTTGTTGAGCATGAAGAAGATAAAATGAAATGTGGCCAAAACCAAAACCTGCTAGAAACGAACATGAAAGTTGAGTCGTCAATGAAGCATGAAAAATGTGTGGAATTGCTGGAAGAACTTAAAGTAACAAAAGATCATGACGAGTTTGTAAACAGGAAGATGGAGGAAGAGAATGATATGGAGACCCATGTTAAGGCCCATCAATGGGAGGTGGAGGAAGTAAGACATATCTGCCAGCAAGAAGAAAAGGAGATGGAAACAAATACTGTCCAAATTGAAAATAACGTTGAAAAGATACTAGACAAATCTACTGAAGATGAAAGAAATATAAATCTGATTGATGACTTCCTTGATGGCAAAGATTCTCATGACGTGGAAGAAAGTGGCGAATTGAAACTAAGCAGCCTTCAAGAAAACAAACAGGATGATGAGGTGATTGAAGGGATTTCCTTTCATTTGTTCAGTCATGAGATTGAACATGTTCTTAGACAAATAAACATTGGTGAATGTGGAGTACCAGAGAGCATTATAAAAGCAACGCTAAACAATCAGAATACCGAGAGTAAAATTGAATTACAAGATGGTTCATGTAAGCAGGATGAGTTTGGAAAACTCTCAGAAGATCAGGAAACTAGTGATTTTATAGAAAGTATGGAAGAAGTGGAAGTGATTCTTGACCAACCTGCATACCGAGACACTGATAGTTCAAAAGATGTAGCAAAAATTTCCTTTGAAGTTGAAAATAATCAATCTGAGACAATTACAGAGGGTGACATGGAGGATAGATTGCCTTTTGAATTGTTTTCCCTGGCCGAGGATGCACTTAAACGTAGAGAATTTAAAATTAGGATGGATGATTCACACACAAGCCCTACTTTGATCCCAAATGGGGTAGATTTTGGTGTGGTTGATATAAAATTGGGGCAGAAATATAAAGAAGCTTTGGCTCCAGAATTTAGAGAAATTGAGAGAAATATAAAGGAAATTGAATTCTCAACAAACAAAGAAAATGATGACAACAATTCAAATGAAGAAGAGACATTCCGAACTGTAAATAATATCAATATTGAAGCAAGCAATGAGCCTAGTACATCTGAAAATGACAAGAAAATCAGTGAAGAAGCAACGGAGGAAATGGTCACGAGCATAATTACTGAAGCAACTCAGGATAACTATCAAGCTACCATCAAAGTAGAAGAAAGTGAAACTGATTATGTATTGAAAAAGGAAATGCAGTTAGACTCCGATGAGAACAATAATAGAGCAGGTAGCCAATCTGGCACAATTGAAATAGATTCGGGAATAATTCATATGATCAAAATAAGTCAAAGTTCAAGAGAAAGTGAGGAGAGTTATCACGTGACAGAGGATGAAATGGAAGCTGGTGGTTCCTCTGACGAAGAGTTGGAATATGCAGCTCACTTGGAAAATTTAGAAGTTAATTCACCTGGAAGTTCTGGAAGAAAAGAAAATTTAGCCGATACAGAACAGGAAATTAATACTAGCCAAAAGGTTACAGATAACGAGGATCGTCAAACGACCCCAACACTGGGTGAAACTGAAACTAATGCTGACATGAAGACAAGAGAAGCAGGTGTTGAATCCAAATTCAACAGTGAGACAGCAGCTCGTGGTTTGTCTCAAGCTAAAGAGGTAGTAGAGAAGTTACCTGAGAATTTGGCGAATCAAAGTATCTTAGAAACTGGGGAGAATGACCAAGCGACCCATTTAATGCAGGAGGAGAAGGTATTCTATGACACATTTGAGAAAGAAGCTGAAGTGATTAAGGGACCGCAGAGAAAAATTGATGATTCCAAAGAAAAGGAGAAAGAGAGAGAGAGATTAGCTGTAGAAAGAGCAATTCGTGAGGCCCGTGAAAGGGCATTTGTAGAAGCCCGAGAGAGGGCTGCTGCCGGGAGAGCTTCTGCCGACACTCGTAGAAGAGTCATGGCTGAGGCACGTGATCGCTCAGGGAAGGTCTCCATAGAGACCAATCACAAGCCTTCTGCAGATAAGGTTTCAAAAGAAGCCAAATTAAAAGCTCAACGTGCTGCTGTTGAAATGGCTACTGCTGAGGCTAGGGAGCGTGCTTTAGAAAAAGCTATGTCTGAGAAGGCTATTTCTGAGGCACGAAATCTTGCTGACAAAATTGTTGCTGAAAAATTACATGGTGCTGCTGGAGATAGCAGAGTAAAAAAGAGTTTTTCATTTAGTGATTCTCAACCAAAAGGCCCAGGTTCTTCCAACAATTTCAGGCATGCCAATTCATTTAACCTTGGAGGCCCTGACTCTTCAGAGAGAGAGGTGGGATCTTCTGGGGAATCAGCTCAAAGATGTAAAGCCAGGTTGGAGAGGCATCAACGAACTGTTGAGCGTGTGGCAAAAGCTCTTGCTGAGAAGAATATTCGTGACATTCTTGCACAAAAAGAACAGGAAGAGAGAAATAGACTTGCGGAATCTCTAGATGCTGAAGTTAAACGGTGGTCAAGTGGGAAGGAGGGAAATCTGCGTGCATTGCTTTCAACTCTTCAATATATTCTCGGGCCCGACAGTGGGTGGCAGGCAGTCCCTCTAACAGATATCATCACAACCGTTGCTGTCAAGAAAGCTTACCGTAGAGCAACTCTTTCTGTTCATCCTGACAAATTGCAACAACGTGGTGCAACCATTCAACAAAAGTACATATGCGAAAAGGTTTTTGATCTTTTGAAGGCTGCATGGAACAGGTTCAACGTGGAGGAACGATTGTAA 4530 41.59 DGYSLRLPTTFLRHRRSLNHPFPCLVTKKTGGRRKSGTEKSRRTLNLLPSSMEYRASSTVYNKFSNARGFNDKSVYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIPILDVPALSDKKFPVDVRTSKVEYSKIFGGFDELNFAIPYEELLVEANKTNSFSQKSRISAGRGSTASQNPSQYEKESNFSTREASSQPLDKMEKFSVSYQKINQGNKSYATETAHVALPHAIPGFSCVIDQQFPVQMSGTGMPSSEKLNNIRTENIGSTEVTDKSERPISSDSEQVFKASNPTNSQSRTGWFRSDSADKLFNGYAVDQGVQNPDTPPKCNFLPKFGKSAGFSGRETGLKSEAFEHSEDPCDGSSPPYFGEDVEVNPVAAASVAALRKAIDAAQESIKIAKESMERRKTAGLQKHKKTRSSRRLTSEEKREVKTSNNSGTCQEMVAGETCGKVNTLEQAVAEIRRQNSTTEECPVTQSAVRENLNAAGTNDMEFKMSEVDCREEEGEELDAKEQFYEPRSFGEDEAEELEPVKEHNADGYEWQGNNGLKKTFENPGESNDSLVVVKEAGLEEGGINLSVVKGILMSKLKSVLGVVEHEEDKMKCGQNQNLLETNMKVESSMKHEKCVELLEELKVTKDHDEFVNRKMEEENDMETHVKAHQWEVEEVRHICQQEEKEMETNTVQIENNVEKILDKSTEDERNINLIDDFLDGKDSHDVEESGELKLSSLQENKQDDEVIEGISFHLFSHEIEHVLRQINIGECGVPESIIKATLNNQNTESKIELQDGSCKQDEFGKLSEDQETSDFIESMEEVEVILDQPAYRDTDSSKDVAKISFEVENNQSETITEGDMEDRLPFELFSLAEDALKRREFKIRMDDSHTSPTLIPNGVDFGVVDIKLGQKYKEALAPEFREIERNIKEIEFSTNKENDDNNSNEEETFRTVNNINIEASNEPSTSENDKKISEEATEEMVTSIITEATQDNYQATIKVEESETDYVLKKEMQLDSDENNNRAGSQSGTIEIDSGIIHMIKISQSSRESEESYHVTEDEMEAGGSSDEELEYAAHLENLEVNSPGSSGRKENLADTEQEINTSQKVTDNEDRQTTPTLGETETNADMKTREAGVESKFNSETAARGLSQAKEVVEKLPENLANQSILETGENDQATHLMQEEKVFYDTFEKEAEVIKGPQRKIDDSKEKEKERERLAVERAIREARERAFVEARERAAAGRASADTRRRVMAEARDRSGKVSIETNHKPSADKVSKEAKLKAQRAAVEMATAEARERALEKAMSEKAISEARNLADKIVAEKLHGAAGDSRVKKSFSFSDSQPKGPGSSNNFRHANSFNLGGPDSSEREVGSSGESAQRCKARLERHQRTVERVAKALAEKNIRDILAQKEQEERNRLAESLDAEVKRWSSGKEGNLRALLSTLQYILGPDSGWQAVPLTDIITTVAVKKAYRRATLSVHPDKLQQRGATIQQKYICEKVFDLLKAAWNRFNVEERL 1509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4781551 4787862 - MELO3C003815.2.1 Cme04g00546 324807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00546 1509 PANTHER AUXILIN-LIKE PROTEIN 1 52 1012 - -
Cme04g00546 1509 Coils Coil 1267 1294 - -
Cme04g00546 1509 Coils Coil 383 403 - -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 1228 1270 - -
Cme04g00546 1509 Coils Coil 1200 1220 - -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 926 967 - -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 283 302 - -
Cme04g00546 1509 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 52 1012 - -
Cme04g00546 1509 Gene3D DnaJ domain 1382 1508 IPR036869 -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 1317 1373 - -
Cme04g00546 1509 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1009 1508 - -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 1036 1053 - -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 402 438 - -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 939 955 - -
Cme04g00546 1509 PANTHER AUXILIN-LIKE PROTEIN 1 1009 1508 - -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 165 200 - -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 1326 1355 - -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 270 302 - -
Cme04g00546 1509 SUPERFAMILY Chaperone J-domain 1367 1504 IPR036869 -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 1072 1115 - -
Cme04g00546 1509 MobiDBLite consensus disorder prediction 1036 1128 - -
Cme04g00546 1509 Coils Coil 1369 1420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00546 - - - csv:101221326 2535.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00546 Cme-Chr4:4781551 Cme08g01840 Cme-Chr8:21918084 4.50E-54 dispersed
Cme04g00546 Cme-Chr4:4781551 Cme08g00860 Cme-Chr8:5665035 5.64E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g969 Blo01g01570 . . . . . . Bma01g02328 . . Cma01g01918 . Car01g01499 . . . . . . . . . . . . . . . . . . Cone4ag1922 Cone7ag1834 . . Lsi04g01688 Csa03g04228 Chy04g00487 . . . . . . . . . . Cmo01g01981 . . . . . . Cpe02g00118 . . . . . . . Cla05g01924 Cam05g2061 Cec05g2074 Cco05g2125 Clacu05g2055 Cmu05g1932 Cre05g2055 . . . Cme04g00546
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008012 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00546 Cme_Chr04 FPKM 2.041152 2.13998 1.563974 2.325237 2.566126 1.778265 6.152473 1.522268 0.873084 1.166992