Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00548 ATGCCTCTGAGAGGCATAATTTGTGAGAAGACTGAAATACGCGAAAGCAGTGGGAATTCATCGAGGAAAGTTAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTTCCAGAACAGCCTTCTTCTTTATCTTCTCCGGTTCCGGTTGAACAGAGCCGTTGGGCGAATTTTCCTCCGGAGCTTCTATTGGACGTAATTCAACGGGTGGAAGCGAGTGAAACCTCTTGGCCTTCTCGTCGGGATGTTGTTGCTTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTTGTTAGGACTCCTGAACAGAGTGGGTGGATCACGTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGATACTCCGATCCAGTGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTTAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCAATGAGTACAGAGTTCATTATATCATTAATTCCAGACGACTTCTCTCGAGCAAGCAACAATTACTTGGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCTCATGACCCAAAATTGCGAACCAGTAGATCAAAAAGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAGAACTCCAACAAACTATAAAGTCGCTGCCGTAGCTTACGAGCTCAACGTCCTCCGTACGAGAGGTCCAAGAAGAATGCGATGCACCATGCATTCAATACCTATTGCGTCCGTGGAGGAGGGTGGGACTGCCCCAACTCCGACAGAGTTTAAAGACTGTATCAATGAATATCATTCCTCAACACCACTTTCCAAAGGAAAGAAAGCGATAACCGAGTCCCCAACCGAGTCCCCCGACTCTCAGGAATCGGTAGCTCCATTGATATTGAAGAACAAAGCTCCAAGATGGCACGAGCAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTCGCCTCAGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAATCAAAACGTATCGGCAGCCGAACAAGAGAGAGTTATTTTGCAGTTTGGTAAGATTGGGAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTCGCAATTTGTCTTAGTAGCTTTGATACGAAGCCAGCCTGTGAATGA 1236 46.52 MPLRGIICEKTEIRESSGNSSRKVREGVQMRHLGKSHIVPEQPSSLSSPVPVEQSRWANFPPELLLDVIQRVEASETSWPSRRDVVACASVCRSWRMITKEVVRTPEQSGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTEFIISLIPDDFSRASNNYLGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSRTPTNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIASVEEGGTAPTPTEFKDCINEYHSSTPLSKGKKAITESPTESPDSQESVAPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETNQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4844554 4847778 + MELO3C003818.2.1 Cme04g00548 324809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00548 411 ProSitePatterns Tub family signature 1. 339 352 IPR018066 -
Cme04g00548 411 Pfam Tub family 118 406 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 321 338 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 339 355 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Cme04g00548 411 ProSitePatterns Tub family signature 2. 396 411 IPR018066 -
Cme04g00548 411 Gene3D - 52 106 - -
Cme04g00548 411 SUPERFAMILY F-box domain 51 100 IPR036047 GO:0005515
Cme04g00548 411 MobiDBLite consensus disorder prediction 293 315 - -
Cme04g00548 411 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 411 - -
Cme04g00548 411 Pfam F-box domain 57 104 IPR001810 GO:0005515
Cme04g00548 411 PANTHER TUBBY-RELATED 1 411 - -
Cme04g00548 411 Gene3D Tubby Protein; Chain A 115 411 IPR025659 -
Cme04g00548 411 MobiDBLite consensus disorder prediction 15 47 - -
Cme04g00548 411 SUPERFAMILY Tubby C-terminal domain-like 106 411 IPR025659 -
Cme04g00548 411 MobiDBLite consensus disorder prediction 15 32 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00548 K19600 TUB, TULP; tubby and related proteins - csv:101222500 801.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00548 Cme-Chr4:4844554 Cme07g01658 Cme-Chr7:22249029 0 dispersed
Cme01g02537 Cme-Chr1:33325526 Cme04g00548 Cme-Chr4:4844554 3.32E-15 transposed
Cme04g00548 Cme-Chr4:4844554 Cme08g00854 Cme-Chr8:5627200 1.50E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g960 Blo01g01567 Blo12g00905 Bda01g00525 Bda03g00263 Bpe02g00385 Bpe04g00217 Bma04g00212 . . . Cma01g01916 Cma09g00148 Car01g01497 . . Cpe06g00104 . . . . . . . . . . . . . . . Cone4ag1918 Cone7ag1830 . . Lsi04g01686 Csa03g04225 Chy04g00489 . . . . . . . . . . Cmo01g01979 Cmo09g00146 . . . Car09g00133 . Cpe02g00120 . . . . . . . Cla05g01926 Cam05g2064 Cec05g2076 Cco05g2127 Clacu05g2058 Cmu05g1935 Cre05g2058 . . . Cme04g00548
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g00617 . 1 430 TUB Transcription Factor Family AT1G76900 72.5 1.1e-177 619.8
Cme03g00315 . 1 432 TUB Transcription Factor Family AT1G76900 68.9 4.3e-169 591.3
Cme06g01306 . 1 428 TUB Transcription Factor Family AT1G76900 69.7 1.3e-168 589.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT1G76900 50.2 1.6e-115 413.3
Cme06g00687 CCT,ECH 13 387 TUB Transcription Factor Family AT1G76900 51.4 2.9e-112 402.5
Cme06g01306 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 7.8e-102 367.1
Cme03g00315 . 175 432 TUB Transcription Factor Family AT1G25280 70.8 1.3e-93 339.7
Cme03g00617 . 173 430 TUB Transcription Factor Family AT1G25280 67.9 1.1e-92 336.7
Cme06g00687 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.9 9.3e-71 263.8
Cme07g01658 . 177 414 TUB Transcription Factor Family AT1G25280 56.2 9.3e-71 263.8
Cme04g00548 . 180 411 TUB Transcription Factor Family AT1G25280 55.3 8.7e-69 257.3
Cme08g00854 . 176 414 TUB Transcription Factor Family AT1G25280 51.3 6.5e-64 241.1
Cme06g00687 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.8 2.9e-97 352.1
Cme03g00617 . 112 430 TUB Transcription Factor Family AT5G18680 52.6 6.2e-84 307.8
Cme03g00315 . 112 432 TUB Transcription Factor Family AT5G18680 52.1 3.1e-83 305.4
Cme06g01306 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 1.2e-82 303.5
Cme07g01658 . 115 414 TUB Transcription Factor Family AT5G18680 52.9 3.5e-79 292.0
Cme04g00548 . 116 411 TUB Transcription Factor Family AT5G18680 50.5 1.6e-76 283.1
Cme07g01369 . 115 383 TUB Transcription Factor Family AT5G18680 50.2 7.4e-69 257.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT2G18280 62.1 2.4e-144 508.8
Cme08g00854 . 1 414 TUB Transcription Factor Family AT2G18280 60.1 1.1e-136 483.4
Cme04g00548 . 1 411 TUB Transcription Factor Family AT2G18280 58.2 8.2e-124 440.7
Cme06g01306 . 1 428 TUB Transcription Factor Family AT2G18280 53.4 1.2e-119 426.8
Cme03g00617 . 1 430 TUB Transcription Factor Family AT2G18280 52.9 1.5e-117 419.9
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 54.3 1.3e-116 416.8
Cme03g00315 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.4e-112 403.3
Cme07g01369 . 52 383 TUB Transcription Factor Family AT2G18280 51.3 8.8e-94 340.9
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 68.5 1.5e-160 562.8
Cme03g00617 . 1 430 TUB Transcription Factor Family AT2G47900 55.5 2.9e-132 468.8
Cme06g01306 . 1 428 TUB Transcription Factor Family AT2G47900 56.7 1.2e-130 463.4
Cme03g00315 . 1 432 TUB Transcription Factor Family AT2G47900 55.7 7.9e-130 460.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT2G47900 55.9 7.2e-123 437.6
Cme04g00548 . 10 411 TUB Transcription Factor Family AT2G47900 55.7 1.5e-117 419.9
Cme08g00854 . 1 414 TUB Transcription Factor Family AT2G47900 51.4 1.1e-112 403.7
Cme07g01369 . 50 383 TUB Transcription Factor Family AT2G47900 51.4 8.5e-100 360.9
Cme11g01977 CCT,ECH 1 228 TUB Transcription Factor Family AT2G47900 56.5 1.6e-74 276.9
Cme01g02537 . 82 260 TUB Transcription Factor Family AT1G16070 52.7 4.0e-51 198.7
Cme03g00617 . 67 430 TUB Transcription Factor Family AT1G43640 70.8 9.8e-148 520.0
Cme06g01306 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 6.3e-147 517.3
Cme03g00315 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 2.0e-140 495.7
Cme06g00687 CCT,ECH 49 387 TUB Transcription Factor Family AT1G43640 53.4 2.1e-105 379.4
Cme04g00548 . 69 411 TUB Transcription Factor Family AT1G43640 50.5 3.4e-100 362.1
Cme07g01658 . 68 414 TUB Transcription Factor Family AT1G43640 50.3 7.1e-98 354.4
Cme08g00854 . 67 414 TUB Transcription Factor Family AT1G43640 50.1 4.8e-94 341.7
Cme04g00548 . 34 411 TUB Transcription Factor Family AT1G47270 63.9 5.4e-136 481.1
Cme07g01658 . 34 414 TUB Transcription Factor Family AT1G47270 58.3 4.0e-123 438.3
Cme08g00854 . 33 414 TUB Transcription Factor Family AT1G47270 56.3 2.4e-120 429.1
Cme06g01306 . 1 428 TUB Transcription Factor Family AT1G47270 52.3 2.6e-114 409.1
Cme03g00617 . 30 430 TUB Transcription Factor Family AT1G47270 52.2 8.4e-113 404.1
Cme03g00315 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 3.2e-112 402.1
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 50.2 2.4e-104 375.9
Cme07g01369 . 1 383 TUB Transcription Factor Family AT1G53320 71.9 3.9e-155 544.7
Cme07g01658 . 20 414 TUB Transcription Factor Family AT1G53320 51.4 2.0e-103 372.9
Cme06g00687 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 63.8 2.8e-97 352.1
Cme06g01306 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 5.7e-82 301.2
Cme03g00617 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 8.2e-81 297.4
Cme03g00315 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 2.4e-80 295.8
Cme07g01658 . 119 414 TUB Transcription Factor Family AT3G06380 54.1 6.9e-80 294.3
Cme04g00548 . 120 411 TUB Transcription Factor Family AT3G06380 52.4 2.2e-78 289.3
Cme08g00854 . 118 414 TUB Transcription Factor Family AT3G06380 50.5 1.8e-75 279.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005909 3 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41158 PF01167 Tub 1.40E-105 CL0395 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00548 Cme_Chr04 FPKM 9.047619 7.24321 12.669038 11.448469 8.491102 6.952979 13.524316 6.464697 6.006411 8.402343