Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00548 ATGCCTCTGAGAGGCATAATTTGTGAGAAGACTGAAATACGCGAAAGCAGTGGGAATTCATCGAGGAAAGTTAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTTCCAGAACAGCCTTCTTCTTTATCTTCTCCGGTTCCGGTTGAACAGAGCCGTTGGGCGAATTTTCCTCCGGAGCTTCTATTGGACGTAATTCAACGGGTGGAAGCGAGTGAAACCTCTTGGCCTTCTCGTCGGGATGTTGTTGCTTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTTGTTAGGACTCCTGAACAGAGTGGGTGGATCACGTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGATACTCCGATCCAGTGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTTAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCAATGAGTACAGAGTTCATTATATCATTAATTCCAGACGACTTCTCTCGAGCAAGCAACAATTACTTGGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCTCATGACCCAAAATTGCGAACCAGTAGATCAAAAAGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAGAACTCCAACAAACTATAAAGTCGCTGCCGTAGCTTACGAGCTCAACGTCCTCCGTACGAGAGGTCCAAGAAGAATGCGATGCACCATGCATTCAATACCTATTGCGTCCGTGGAGGAGGGTGGGACTGCCCCAACTCCGACAGAGTTTAAAGACTGTATCAATGAATATCATTCCTCAACACCACTTTCCAAAGGAAAGAAAGCGATAACCGAGTCCCCAACCGAGTCCCCCGACTCTCAGGAATCGGTAGCTCCATTGATATTGAAGAACAAAGCTCCAAGATGGCACGAGCAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTCGCCTCAGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAATCAAAACGTATCGGCAGCCGAACAAGAGAGAGTTATTTTGCAGTTTGGTAAGATTGGGAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTCGCAATTTGTCTTAGTAGCTTTGATACGAAGCCAGCCTGTGAATGA 1236 46.52 MPLRGIICEKTEIRESSGNSSRKVREGVQMRHLGKSHIVPEQPSSLSSPVPVEQSRWANFPPELLLDVIQRVEASETSWPSRRDVVACASVCRSWRMITKEVVRTPEQSGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTEFIISLIPDDFSRASNNYLGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSRTPTNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIASVEEGGTAPTPTEFKDCINEYHSSTPLSKGKKAITESPTESPDSQESVAPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETNQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4844554 4847778 + MELO3C003818.2.1 Cme04g00548 324809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00548 411 ProSitePatterns Tub family signature 1. 339 352 IPR018066 -
Cme04g00548 411 Pfam Tub family 118 406 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 321 338 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 339 355 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Cme04g00548 411 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Cme04g00548 411 ProSitePatterns Tub family signature 2. 396 411 IPR018066 -
Cme04g00548 411 Gene3D - 52 106 - -
Cme04g00548 411 SUPERFAMILY F-box domain 51 100 IPR036047 GO:0005515
Cme04g00548 411 MobiDBLite consensus disorder prediction 293 315 - -
Cme04g00548 411 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 411 - -
Cme04g00548 411 Pfam F-box domain 57 104 IPR001810 GO:0005515
Cme04g00548 411 PANTHER TUBBY-RELATED 1 411 - -
Cme04g00548 411 Gene3D Tubby Protein; Chain A 115 411 IPR025659 -
Cme04g00548 411 MobiDBLite consensus disorder prediction 15 47 - -
Cme04g00548 411 SUPERFAMILY Tubby C-terminal domain-like 106 411 IPR025659 -
Cme04g00548 411 MobiDBLite consensus disorder prediction 15 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00548 Cme-Chr4:4844554 Cme07g01658 Cme-Chr7:22249029 0 dispersed
Cme01g02537 Cme-Chr1:33325526 Cme04g00548 Cme-Chr4:4844554 3.32E-15 transposed
Cme04g00548 Cme-Chr4:4844554 Cme08g00854 Cme-Chr8:5627200 1.50E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41158 PF01167 Tub 1.40E-105 CL0395 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00548 K19600 - csv:101222500 801.586