Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00563 ATGGATGCTACTTCGTCTTCGTTTAAGATAATTTTGGGATCATCTTCAGTGGCACGTAGGAAGATATTATCTGAGATGGGTTATGAATTCACCATTATGTCTGCAGATATTGATGAGAAGGCCATACGCAAAGAAAAGCCGGAAGAGTTGGTTGTGGCTCTTGCAGAAGCAAAGGCTGATGCCATCATATCCAATTTACAAAACATTGATACACATGAAAAGGAAGCAGAACAAACAGTTTTGATTGCTGCCGACACAGCAGATGCCATCTTAGGAAGACTTTCCACGGATGATTTTATGAAGGATGCAGAGCCAACACTGTTGATTACTTCTGATCAAGTGGTGATCTATGAAGGTGTCATCAGAGAAAAACCAGCCAGCAAGGAGGAAGCACGACAATTTTTGAAAGATTATTCAGGAGGGCATGCAGCCACACTTGGATCTGTACTAGTTACAAACCTCAAAACAGGATTTAGGAAAGGGGAATGGGATCGAGTAGAGATCTTTTTCAATGAAATACCCGATGAAGTCATCGACAAGCTGGTCGAGGAGGGGACTGTGCTCTATGTCGCTGGAGGGCTGATTATCGAGCATCCTTTGATTTTACCCTATGTGAAAGAAGTGGTAGGGACGACGGATAGTGTGATGGGTCTTCCCAAGGCTTTGACTGAGAAGCTCTTGAAGGAAGCCATGTAG 696 43.53 MDATSSSFKIILGSSSVARRKILSEMGYEFTIMSADIDEKAIRKEKPEELVVALAEAKADAIISNLQNIDTHEKEAEQTVLIAADTADAILGRLSTDDFMKDAEPTLLITSDQVVIYEGVIREKPASKEEARQFLKDYSGGHAATLGSVLVTNLKTGFRKGEWDRVEIFFNEIPDEVIDKLVEEGTVLYVAGGLIIEHPLILPYVKEVVGTTDSVMGLPKALTEKLLKEAM 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5054133 5058527 - MELO3C003831.2.1 Cme04g00563 324824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00563 231 PIRSF Maf 1 231 IPR003697 GO:0047429
Cme04g00563 231 Pfam Maf-like protein 9 229 IPR003697 GO:0047429
Cme04g00563 231 PANTHER MAF-LIKE PROTEIN 3 86 - -
Cme04g00563 231 PANTHER MAF-LIKE PROTEIN 87 230 - -
Cme04g00563 231 PANTHER BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 3 86 IPR003697 GO:0047429
Cme04g00563 231 PANTHER BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 87 230 IPR003697 GO:0047429
Cme04g00563 231 SUPERFAMILY ITPase-like 8 87 IPR029001 -
Cme04g00563 231 Hamap dTTP/UTP pyrophosphatase. 9 231 IPR003697 GO:0047429
Cme04g00563 231 SUPERFAMILY ITPase-like 76 229 IPR029001 -
Cme04g00563 231 Gene3D - 90 230 IPR029001 -
Cme04g00563 231 Gene3D - 2 89 IPR029001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00563 - - - csv:101203418 419.853
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00563 Cme-Chr4:5054133 Cme07g01669 Cme-Chr7:22309031 2.28E-72 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g949 . . . . . . . . . . Cma01g01912 Cma09g00156 Car01g01493 . . Cpe06g00111 . . . . . . . . . . . . . . . . . Cone17ag1344 . Lsi04g01667 Csa03g04212 Chy04g00507 . Blo17g00799 . . . . . . Bma05g00121 . Cmo01g01974 Cmo09g00155 . . . Car09g00138 . Cpe02g00125 . . . . . . . Cla05g01938 Cam05g2082 Cec05g2095 Cco05g2146 Clacu05g2078 Cmu05g1952 Cre05g2073 . . . Cme04g00563
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001845 2 11 1 1 1 2 3 1 1 1 1 2 2 2 2 3 2 2 3 2 2 1 2 2 2 1 2 8 1 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00563 Cme_Chr04 FPKM 0.0 0.0 0.339472 0.0 1.557052 1.305605 1.656439 0.475625 0.756758 0.523785