Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00572 ATGGCTATAGCTCGGCTAGCTCGCCAAGCAAAGCGTTCGTATGGGTTTTGCGCGAAGTTGACGGCAGTGGTTATTTTAGGCCTTAGCTTTATAGTCGTTTGGTCTGTTTTTGCTTCTCCTTCCACGTCCGTGACTATTCAGAGGGAAAGTTTCGACAATATTGGCGAACCCGTAACAGGAAACACGAAAGTAAGCCATCCTAAAACTCAAAATGATAATAGGAAGAAGATAGATGAGGGCAATTTGAGCAGGAATACGAAAGATAAAGTGAAATCCGATCTAGGTGGAAGTGATACGAAAAAGGTTAACGGTTCGGATTCCAAGTCTCCCAGTAACCATAACCATGCATCTGAAAAAAAGCATGGAGCAGCAAAAGAGAAAAACGAGAAACATAAAGAAAATAAACCAGAGGTTACAAGAAAAGGGAATCAAGGATCAGAGGAATCTGAGGATGAAGATGCAGAAAAGGGAAATGAGGAGGAAGAACAGGAAGTGGTTGATGGTCAAGAAGGAGAGCTAAAGGATGATGAAGCTGAAACAGAAGGTGATCTGGGTGAGTCAGATCAGGAACCCGAGGATAGGATTGAGCCAAAAGATACAGGGAAAAAATTCAAGAGAAAAGGTCCATTGTTTGATCCAAATGCTCGTTATAGTTGGAAACTATGCCGAGCAAGAAGTAAATACAATTACATCCCTTGTATTGACATTGAATCTGGAGTGGGAAGACAACAGGGCTATCGGCATAGGGAAAGGAGTTGCCCAAAAGCACCTCCATTGTGCGTTGTGCCTCTTCCTCCCAGTGGATACAGGCCCCCCGTGCACTGGCCGGAGAGCAATTCAAAGATACTTTACAAGAATGTGGCACATCCAAAACTTGCTGCTTTCATTAAGAAACATGATTGGTTGGTGGCAGCTGGAGAGTTCCTTACATTTCCTCAGAATCATTCTGAGCTCAACGGTGGAGTTATCCACTATCTCGAGTCCATTGAAGAGGTGTGCATTAGATTTGGTTTCTCTACTTCTCCAGGGAATTATGTTTCTATTCATGGACTGAAATTTGAATACATTTGGCAGATGGTACCCGATATTGAATGGGGCAAGAATATTCACGTGGTTCTTGAAATTGGGTGCACATATGCAAGTTTAGGGGCTTCTCTTCTAGAAAAGAATGTTATAACATTGTCATTGGGCTTGAAGGATGACCTTGTGGACTTGGCTCAAGTTGCACTTGAGCGAGGGTTTCCAACTGTGGTTAGCCCTTTTGGGAATAGAAGACTTCCTTTTCCTAGTGGTGTTTTTGATGCCATTCATTGTGGGGGATGCAGTAGAAGTTGGCATTCCAAAGATGGGAAGCTTCTCCTAGAAATGAATAGAATTTTAAGGCCTGGAGGATACTTCATCTTGTCCAGTAAACATGACAACATTGAAGAAGAAGAAGCAATGAGTTCATTGACGGCTTCAATTTGTTGGAACATTCTGGCGCATAAAACTGATGAAGTCAGTGAAGTGGGTGTTAAGATATATCAGAAACCTGAATCAAACGATATATTTGAGCTGAGGAGAAGGAAAAATCCACCTCTCTGCAAGGAAAACGAAAACCCTGATGCTGCCTGTTTAAACAGGTACGTGCCTATGACAACCTGCTTACACACCGTTCCAACTTCTATTGAACAGCGTGGAGCAGAATGGCCTGAAGAATGGCCGAAGAGACTTGAATCTTTCCCTGAGTGGTTGAGCAATGACAAAGAGAAGTTAATCGCAGATACCAATCACTGGAAAGCAATTGTTGAGAAGTCATATCTCACTGGAATAGGTATTGACTGGTCGAGTGTTCGAAATGTGATGGACATGAAAGCCATTTATGGGGGGTTTGCTGCTGCTGTCTCGCAGCAGAAGGTTTGGGTAATGAATGTGATCCCGGTCCATGCACCAGATACACTTCCGATAATCTTCGAGCGTGGTCTGGTTGGTGTCTACCATGACTGGTGTGAGTCTTTTGGTACTTATCCACGATCATACGACCTTCTGCATGCCGATCATTTGTTCTCAAGGCTGAAGAACAGGTGCAAGGAGCCTGTAGCAATCGTGGTTGAGATGGATCGTATATTACGACCCGGAGGTTGGGCAATTATACGTGAAAAAGTGATAATTATGAATCCATTGGAAGAGATACTCAAGAGTCTACAATGGGAGATTCGGATGAGTTATTCTCATGGAGATGAGGGAATCCTATGTGCACGGAAGACCATATGGCGGCCTTAA 2262 43.46 MAIARLARQAKRSYGFCAKLTAVVILGLSFIVVWSVFASPSTSVTIQRESFDNIGEPVTGNTKVSHPKTQNDNRKKIDEGNLSRNTKDKVKSDLGGSDTKKVNGSDSKSPSNHNHASEKKHGAAKEKNEKHKENKPEVTRKGNQGSEESEDEDAEKGNEEEEQEVVDGQEGELKDDEAETEGDLGESDQEPEDRIEPKDTGKKFKRKGPLFDPNARYSWKLCRARSKYNYIPCIDIESGVGRQQGYRHRERSCPKAPPLCVVPLPPSGYRPPVHWPESNSKILYKNVAHPKLAAFIKKHDWLVAAGEFLTFPQNHSELNGGVIHYLESIEEVCIRFGFSTSPGNYVSIHGLKFEYIWQMVPDIEWGKNIHVVLEIGCTYASLGASLLEKNVITLSLGLKDDLVDLAQVALERGFPTVVSPFGNRRLPFPSGVFDAIHCGGCSRSWHSKDGKLLLEMNRILRPGGYFILSSKHDNIEEEEAMSSLTASICWNILAHKTDEVSEVGVKIYQKPESNDIFELRRRKNPPLCKENENPDAACLNRYVPMTTCLHTVPTSIEQRGAEWPEEWPKRLESFPEWLSNDKEKLIADTNHWKAIVEKSYLTGIGIDWSSVRNVMDMKAIYGGFAAAVSQQKVWVMNVIPVHAPDTLPIIFERGLVGVYHDWCESFGTYPRSYDLLHADHLFSRLKNRCKEPVAIVVEMDRILRPGGWAIIREKVIIMNPLEEILKSLQWEIRMSYSHGDEGILCARKTIWRP 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5204455 5209736 + MELO3C003837.2.1 Cme04g00572 324833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00572 753 MobiDBLite consensus disorder prediction 68 96 - -
Cme04g00572 753 MobiDBLite consensus disorder prediction 53 67 - -
Cme04g00572 753 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 354 753 IPR004159 GO:0008168
Cme04g00572 753 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 9 333 IPR004159 GO:0008168
Cme04g00572 753 PANTHER METHYLTRANSFERASE PMT28-RELATED 354 753 - -
Cme04g00572 753 PANTHER METHYLTRANSFERASE PMT28-RELATED 9 333 - -
Cme04g00572 753 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 266 482 IPR029063 -
Cme04g00572 753 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 545 714 IPR029063 -
Cme04g00572 753 Gene3D Vaccinia Virus protein VP39 346 524 IPR029063 -
Cme04g00572 753 MobiDBLite consensus disorder prediction 148 190 - -
Cme04g00572 753 MobiDBLite consensus disorder prediction 191 209 - -
Cme04g00572 753 MobiDBLite consensus disorder prediction 112 147 - -
Cme04g00572 753 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 229 748 IPR004159 GO:0008168
Cme04g00572 753 MobiDBLite consensus disorder prediction 53 209 - -
Cme04g00572 753 CDD AdoMet_MTases 372 469 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00572 - - - csv:116402714 1347.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00572 Cme-Chr4:5204455 Cme08g00900 Cme-Chr8:5929300 1.08E-178 dispersed
Cme04g00572 Cme-Chr4:5204455 Cme06g00208 Cme-Chr6:1266372 2.87E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g941 Blo01g01561 . Bda01g00531 . Bpe02g00393 . . Bma01g02319 . . Cma01g01907 . Car01g01489 . . . . . . . . . . . . . . . . . . Cone4ag1910 Cone7ag1824 . . Lsi04g01660 Csa03g04205 Chy04g00513 . . . . . . . . . . Cmo01g01970 . . . . . . Cpe02g00129 . . . . . . . Cla05g01944 Cam05g2087 Cec05g2100 Cco05g2154 Clacu05g2082 Cmu05g1958 Cre05g2077 . . . Cme04g00572
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00572 Cme_Chr04 FPKM 27.932636 30.32906 78.348541 75.187363 37.750416 38.199371 34.976303 132.340897 134.439835 131.78389