Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00603 ATGGATGGAAATCAACCAAAAATAAATCAGAAACCTCTCACTACTCTAATTGAGCATTGGATTTCAGAAAAATTTCCAATGTATATTCTTGGCGTTTCTGTTCTTCTATTTCTCACAATCTTCATCTTTAAATTTCTTTACTCCAATTTTTGGGTTCCATGGAGAATTCAAATCCATTTCCAAAAGCAAGGAATAACGGGGCCTCGCTACCGCCCCATCATTGGTAACGCTACCGATATGCGTCGTATGTACATGGAGGCACAAGCGAAGACAATTCCATTAACCCATGATATCGTCTGTCGAGTGCTGCCTTATATTCACCAATGGTCCATGGAGTATGGAAAGATGTTTGTGTATTGGTTCGGACCGAAGCCAAGACTAGCGATATCCGACCCAGTTATGATTAAGGAAGTGCTTGCAAATACAGGCGGGCCTTTTAGAAAGGTGGGGTTCACCCCTGTTTCCAAATTGCTTTTTGGAGAAGGACTTGTTGGACTTGAGGATGAACAATGGGTCGTTCATCGAAGAATCGCAAATCAGGCTTTCACCATCGACCGTGTCAAGGGTTGGTTACCAGAGATTACTTTAAGTGTTCGTAATGTGTTGGATAAATGGGAAGAAATGAAGGGAGGTGTGGAAGAGTTTGAAGTAGATGTCCATAAACAACTTCGTCTCCTCACAGCAGACGTAATTTCAAGAACTGCATTTGGAAGTAATTTTGAAGAAGGCAAACGCATTTTCAACTTGCAAGAACAACAAATGAATCATTTTCTCCAGGCTGTCTCAAGTGTTTATATTCCTGGCTATAGATTTTTACCTACCAAGATGAACAGAGAGAGGGATAGGTTGGAAAAAGAAACTCGTGCGTCAATAAAAGCATTGGTTGAAAGTGAGAAAAACAGAAAAGAAAGGGAAAACTCAACTAATCTACTCAGCCTCTTATTGTCATCATACAAGAACCAGAATGGGGAAATAGAAACACTTGGAGTAGATGAAGTCGTAAATGAATGCAAGACATTCTATTTTGCAGGAATGGAAACAACGGCCAATCTTTTAACTTGGGCACTTTTACTACTAGCAGAGCATCAAGAATGGCAAGATCGAGCTAGAGAAGAAATTGTCAATGTTTGTGGTCAAAAGACACCGCCTACAGCAGATAATTTAACTGAACTAAAACTAGTGGGCATGATAGTCAATGAAACACTTCGACTTTATCCACCAGCGATTATGATGATGAGGCGAACGATGAAGCGACTGACACTAGGAAGCATCGATATTCCAGAAGGCACACAACTTCAACTTTCGGTGGTTGCAATCCACCATGACACAGAGCTTTGGGGAGAAGATGCGCACAATTTCAACCCTAAGAGATTTAGTGAGTCTAGGAAGCATCTAGCTTCATTTCTACCATTCGGGTTAGGTCCTAGAATATGTGTAGGACAACATTTGGCTTTGATCGAGGCTAAAGTTGCATTGGCTATGATAATTCAGCGCTTCGCTTTTACCATTTCTCCAACCTACACGCATGCCCCCATGATGTTTGTGAGCTTGAACCCTCAGTTTGGTGTTCAACTCCTTGTTAGGAGCTTATGA 1593 41.24 MDGNQPKINQKPLTTLIEHWISEKFPMYILGVSVLLFLTIFIFKFLYSNFWVPWRIQIHFQKQGITGPRYRPIIGNATDMRRMYMEAQAKTIPLTHDIVCRVLPYIHQWSMEYGKMFVYWFGPKPRLAISDPVMIKEVLANTGGPFRKVGFTPVSKLLFGEGLVGLEDEQWVVHRRIANQAFTIDRVKGWLPEITLSVRNVLDKWEEMKGGVEEFEVDVHKQLRLLTADVISRTAFGSNFEEGKRIFNLQEQQMNHFLQAVSSVYIPGYRFLPTKMNRERDRLEKETRASIKALVESEKNRKERENSTNLLSLLLSSYKNQNGEIETLGVDEVVNECKTFYFAGMETTANLLTWALLLLAEHQEWQDRAREEIVNVCGQKTPPTADNLTELKLVGMIVNETLRLYPPAIMMMRRTMKRLTLGSIDIPEGTQLQLSVVAIHHDTELWGEDAHNFNPKRFSESRKHLASFLPFGLGPRICVGQHLALIEAKVALAMIIQRFAFTISPTYTHAPMMFVSLNPQFGVQLLVRSL 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5740251 5742192 + MELO3C003868.2.1 Cme04g00603 324864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00603 530 PRINTS P450 superfamily signature 478 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 PRINTS P450 superfamily signature 343 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 PRINTS P450 superfamily signature 469 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 PRINTS P450 superfamily signature 396 407 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 PANTHER CYTOCHROME P450 FAMILY MEMBER 35 525 - -
Cme04g00603 530 Gene3D Cytochrome P450 55 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 SUPERFAMILY Cytochrome P450 63 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 471 480 IPR017972 GO:0005506|GO:0016705
Cme04g00603 530 PANTHER CYTOCHROME P450, FAMILY 721, SUBFAMILY A, POLYPEPTIDE 1 35 525 - -
Cme04g00603 530 PRINTS E-class P450 group I signature 478 501 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 PRINTS E-class P450 group I signature 332 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 PRINTS E-class P450 group I signature 352 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 PRINTS E-class P450 group I signature 134 155 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 PRINTS E-class P450 group I signature 110 129 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 PRINTS E-class P450 group I signature 226 244 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 PRINTS E-class P450 group I signature 468 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00603 530 Pfam Cytochrome P450 106 510 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00603 Cme-Chr4:5740251 Cme04g00607 Cme-Chr4:5831833 0 dispersed
Cme04g00603 Cme-Chr4:5740251 Cme04g00606 Cme-Chr4:5825061 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00603 - - csv:101210542 959.903