Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00606 ATGTATATTCTCGGCGTTTCTGTTCTATTTCTCACAATTTTCATCTTTAAATTTGTCTACTCCAATTTTTGGATTCCATGGAGAATTCAAATCCACTTCCGAAAGCAAGGCATAACGGGTCCTTCATATCGCCCCATCATCGGTAATGCCACTGATATGCGTCGTATGTATATGGAGGCACAAGCGAAGACAATTCCATTAACCCATGATATAGTGTGTCGAGTGCTGCCTTATATTCACCAATGGTCCATGGAGTACGGAAAAATGTTTGTGTATTGGTTCGGATCGAAGCCAAGACTAGCAATATCCGACCCAGTTATGATTAAGGAAGTGCTTGCAAATACAGGCGGGCCTTTTAGAAAGGTGGGGTTTACCGCAGTTTCCAAGTTGCTTTTTGGAGAAGGACTTGTTGGACTCGAGGACGAACAATGGGTTGTTCATCGAAGAATCGCAAATCAGGCTTTCACCATCGACCGTGTCAAGGGTTGGTTACCAGAGATTACTTTAAGTGTTCGTAACGTGTTGGATAAATGGGAAGAAATGAAAGGAGGTATGGAAGAGTTTGAAGTAGATGTCCATAAACAACTTCGTCTCCTCACAGCAGATGTAATATCAAGAACTGCATTTGGAAGTAATTTTGAAGAAGGCAAACGTATTTTCAACTTGCAAGAACAACAAATGAATCATTTTCTCCAAGCTGTCTCAAGTGTTTATATTCCTGGCTATAGATTTTTACCTAGCAAGATGAATAGAGAGAGGGATAGGTTGGAAAAAGAAACTCGTGCATCAATAAAAGCACTAGTTGAAAGTGAGAAAAACAGAAAAGAAAGGGAAAACTCAACTAATCTACTCAGACTCTTATTGTCATCATACAAGAACCAGAATGGGGAAATAGAAACACTTGGGGTGGATGAAGTCGTAAATGAATGCAAGACATTCTATTTTGCAGGAATGGAAACAACGGCCAATCTTTTAACTTGGGCACTTTTACTACTAGCAGAGCATCAAGAATGGCAAGATCGAGTTAGAGAAGAAGTTATCAATGTCTGTGGCCAAAAGACACCGCCTACAACAGATAATTTAACTGAACTAAAACTAGTGGGCATGATAGTCAATGAAACACTTCGACTATATCCACCGGCGATTATGATGATGAGACGGACAATGAAACGACTGACGCTAGGAAACATCGATGTTCCCGAAGGCACACAACTTCAGCTTTCGGTGGTTGCAATCCACCATGATACAGAGCTTTGGGGAGAAGATGCACACACCTTCAACCCTATGAGATTTAGTGAGTCTAGGAAGCATCTGGCTTCATTTTTACCATTTGGGTTGGGTCCTAGAATATGTGTAGGACAACATTTGGCTTTAATCGAGGCCAAAGTTGCATTGGCTATGATAATTCAGCGCTTCGCTTTTACAGTTTCTCCAACCTACATGCATGCCCCTATGATGTTTGTAAGCTTAAACCCTCAGTTTGGTGTACAACTCCTTGTTAGGAGCTTATGGAATTGA 1518 40.97 MYILGVSVLFLTIFIFKFVYSNFWIPWRIQIHFRKQGITGPSYRPIIGNATDMRRMYMEAQAKTIPLTHDIVCRVLPYIHQWSMEYGKMFVYWFGSKPRLAISDPVMIKEVLANTGGPFRKVGFTAVSKLLFGEGLVGLEDEQWVVHRRIANQAFTIDRVKGWLPEITLSVRNVLDKWEEMKGGMEEFEVDVHKQLRLLTADVISRTAFGSNFEEGKRIFNLQEQQMNHFLQAVSSVYIPGYRFLPSKMNRERDRLEKETRASIKALVESEKNRKERENSTNLLRLLLSSYKNQNGEIETLGVDEVVNECKTFYFAGMETTANLLTWALLLLAEHQEWQDRVREEVINVCGQKTPPTTDNLTELKLVGMIVNETLRLYPPAIMMMRRTMKRLTLGNIDVPEGTQLQLSVVAIHHDTELWGEDAHTFNPMRFSESRKHLASFLPFGLGPRICVGQHLALIEAKVALAMIIQRFAFTVSPTYMHAPMMFVSLNPQFGVQLLVRSLWN 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5825061 5826986 + MELO3C030409.2.1 Cme04g00606 324867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00606 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 444 453 IPR017972 GO:0005506|GO:0016705
Cme04g00606 505 Gene3D Cytochrome P450 28 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 SUPERFAMILY Cytochrome P450 34 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PRINTS P450 superfamily signature 451 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PRINTS E-class P450 group I signature 83 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PRINTS E-class P450 group I signature 199 217 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PANTHER CYTOCHROME P450, FAMILY 721, SUBFAMILY A, POLYPEPTIDE 1 8 498 - -
Cme04g00606 505 Pfam Cytochrome P450 79 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00606 505 PANTHER CYTOCHROME P450 FAMILY MEMBER 8 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00606 Cme-Chr4:5825061 Cme04g00609 Cme-Chr4:5866560 0 dispersed
Cme04g00603 Cme-Chr4:5740251 Cme04g00606 Cme-Chr4:5825061 0 proximal
Cme04g00606 Cme-Chr4:5825061 Cme04g00607 Cme-Chr4:5831833 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00606 - - csv:101210785 937.176