Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00611 ATGGCTGGTCGCAAAGACAAAGCTCAATCGCCTCGCGTCTTTCGACTCCTCATCGCCATCGCAATTGGAGTTCTTATTGGCTGTCTTTTTGCTTTCTTTTATCCTCATGGTCTTTTCACCTCTGATCTACCTCTTCAAAACCGTCGACTCGCTAAATTGGACCTTCAGGCTCGGTCTTCTTCCTCGTGCGAGTCTTCAGACCGATCCAAGAACCTTAAAGCCGATGTCGTTTCAATGTTAGAGAAGAACACCCAGTTGGAGAAGCAGATTAAGGATCTTACAAGGGAGCTGAAAATAGTAGAACAATTAAAGGATCATGCTCAGAAGCAATATCTAGCGCTTGGTGAAAATCACAAGGCTGGTCCATTTGGTACTGTCAAAGGTCTTAGAACCAATCCCACTGTAATTCCAGATGAATCTGTGAATCCTCGGTTGGCAAAGCTCCTGGAGAAAGTTGCTATTCAGAAAGAGCTGATTGTGACACTTGCAAATTCTAATGTAAAACCCATGTTGGAGGTTTGGTTTACCAGCATTCAAAAGGTTGGGATACACAATTATTTAGTCGTGGCTCTGGACGACCAGACCGAAGAATTCTGCATCTCCCATGAAGTTCCTGTCTACAAGAGAGATCCAGACGATAACATTGATAAGGTTGGAAAGGAAGGAGGCAACCATCAAGTCTCTGCATTGAAGTTTCGCATTCTGAGGGAGTTCTTGCAACTTGGATACAGTGTTCTTCTCTCAGATGTAGATATAGTCTACCTACAGAACCCTTTCGATCATCTTTTCCGGGATTCAGATGTGGAGTCGATGAGTGATGGTCACAACAATATGACAGCTTATGGATACAACGATGTATTTGATGAACCCTCCATGGGTTGGGCTAGATATGCACACACTATGAGGATATGGGTTTACAACTCTGGTTTCTTCTTCATTAGGCCTACACTTCCTTCATTGGAGCTTTTGGATCGCGTTGCTACTCGGCTTTCTCAAGAACAGGCATGGGACCAAGCCGTTTTCAATGAGGAACTCTTTTACCCTTCTCGTCCTGGACGTGATGGGCTTCATGCCTCCAAGAGAACCATGGACATGTATCTTTTCATGAACAGTAAAGTACTCTTCAAGACAGTTCGAAAGGATCCAAAATTGAAACAGTTGAAACCCGTCATTGTTCATATAAATTACCATCCTGACAAGTATCCTAGAATGAAAGCCGTCGTCGAATTCTACGTCAACGGTAAGCAAAATGCTCTGGATCCTTTCCCAGATGGTTCTGAATGA 1284 43.69 MAGRKDKAQSPRVFRLLIAIAIGVLIGCLFAFFYPHGLFTSDLPLQNRRLAKLDLQARSSSSCESSDRSKNLKADVVSMLEKNTQLEKQIKDLTRELKIVEQLKDHAQKQYLALGENHKAGPFGTVKGLRTNPTVIPDESVNPRLAKLLEKVAIQKELIVTLANSNVKPMLEVWFTSIQKVGIHNYLVVALDDQTEEFCISHEVPVYKRDPDDNIDKVGKEGGNHQVSALKFRILREFLQLGYSVLLSDVDIVYLQNPFDHLFRDSDVESMSDGHNNMTAYGYNDVFDEPSMGWARYAHTMRIWVYNSGFFFIRPTLPSLELLDRVATRLSQEQAWDQAVFNEELFYPSRPGRDGLHASKRTMDMYLFMNSKVLFKTVRKDPKLKQLKPVIVHINYHPDKYPRMKAVVEFYVNGKQNALDPFPDGSE 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5885025 5887810 + MELO3C003877.2.1 Cme04g00611 324872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00611 427 Coils Coil 69 110 - -
Cme04g00611 427 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Cme04g00611 427 PANTHER GLYCOSYLTRANSFERASE 5 427 - -
Cme04g00611 427 PANTHER ARABINOSYLTRANSFERASE RRA3 5 427 IPR044290 GO:0016757|GO:0080147
Cme04g00611 427 SUPERFAMILY Nucleotide-diphospho-sugar transferases 159 362 IPR029044 -
Cme04g00611 427 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 156 410 IPR029044 -
Cme04g00611 427 Pfam Nucleotide-diphospho-sugar transferase 183 400 IPR005069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00611 K20783 RRA; arabinosyltransferase [EC:2.4.2.-] - csv:101205922 833.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01470 Cme-Chr1:19082848 Cme04g00611 Cme-Chr4:5885025 0 dispersed
Cme04g00611 Cme-Chr4:5885025 Cme07g00798 Cme-Chr7:7540561 3.42E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1138 Cone8ag1186 . . Lsi04g01643 Csa03g04187 Chy04g00531 . Blo17g00809 . Bda08g01292 . . Bpe05g00083 . Bma05g00111 . . . . . . Car09g00151 . . . . . . . . . Cla05g01960 Cam05g2108 Cec05g2119 Cco05g2172 Clacu05g2097 Cmu05g1974 Cre05g2093 . . . Cme04g00611
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003395 3 2 1 2 1 0 2 1 1 2 1 1 0 2 2 0 1 7 1 1 2 2 2 1 1 2 1 4 2 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00611 Cme_Chr04 FPKM 30.705362 31.405495 49.888794 47.164181 20.882738 21.298462 21.616095 28.576645 28.215853 28.25235