Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00613 ATGTCTGTGGCTACCAAGCTCCAATCCCACGCTAAACCGGCTTTGGAGCCCCGAGCTATTCTTGGACCTGGCGGGAACAGAGATAGGGCACCTCATAACCCGAAATGTAAACCGGAAACTTTAAAGAAGACGGAGAAGCAGAGCAAGGCGCTTCCGGTGATTTCTGAATTGGTTATTCGAGATAATGTCTCCGTCGGGAGTTCCTGCTCTTCTGATTCTTTATCGAGTAATTATTCTGTCAAATTATTGAAGCCCTACGCTGTGAAGCCTGTTTCTGCCGGCGGTGACTCAAGCGCCACCACGACGTCGCCTGCGCTCTCGCTTCCGGGGAAACGCTGTGATTGGATAACGCTTCATTCGGATCCACTTTACATCGCTTTTCATGATGAAGAATGGGGAGTCCCAGTTCATGACGACAAGAAGCTATTTGAGTTACTTGTATTATCACAAGCCTTAGCAGAACTTACTTGGCCCTTGATTCTTAGCAAAAGAGATATATTTAGGAAAGTTTTGAATGATTTTGACCCATCTTCAATCGCACAGTTCAAAGAGAACGAGTTTACGACGCTAAAAGTAAATGGCATCCAACTCCTGTCTGAACCGAAGCTTCGTGCAATTGTAGAGAACGCTAACCAAGTACTCAAGGCAACAAAGCCTCCCCCAAGAAAGCGTTTGATTCAAAAGGAATTTGGTTCCTTCAGCAACTATTGTTGGAGCTTTGTTAACAAGAAGCCTATACGAAACAGGTTTCGATACAATCGTCAAGTACCCGTCAAGACGCCGAAAGCAGAGTTCATGAGCAAGGATATGATGAGGAGGGGATTCCGTTGCGTCGGGCCAACTGTGGTTTATTCCTTTATGCAGGTTGCTGGAATTGTTAACGATCACTTGGCTAATTGCTTCAGATATGAGGAGTGTGACACAACAAAGATAAAAGACGATAAGAAATTAAGAGTAGAAGATAAACGGTAG 972 44.96 MSVATKLQSHAKPALEPRAILGPGGNRDRAPHNPKCKPETLKKTEKQSKALPVISELVIRDNVSVGSSCSSDSLSSNYSVKLLKPYAVKPVSAGGDSSATTTSPALSLPGKRCDWITLHSDPLYIAFHDEEWGVPVHDDKKLFELLVLSQALAELTWPLILSKRDIFRKVLNDFDPSSIAQFKENEFTTLKVNGIQLLSEPKLRAIVENANQVLKATKPPPRKRLIQKEFGSFSNYCWSFVNKKPIRNRFRYNRQVPVKTPKAEFMSKDMMRRGFRCVGPTVVYSFMQVAGIVNDHLANCFRYEECDTTKIKDDKKLRVEDKR 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5902890 5905552 + MELO3C003879.2.1 Cme04g00613 324874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00613 323 Pfam Methyladenine glycosylase 119 302 IPR005019 GO:0006284|GO:0008725
Cme04g00613 323 Gene3D Hypothetical protein; domain 2 110 303 - -
Cme04g00613 323 MobiDBLite consensus disorder prediction 30 46 - -
Cme04g00613 323 PANTHER OS04G0501200 PROTEIN 1 316 - -
Cme04g00613 323 MobiDBLite consensus disorder prediction 1 48 - -
Cme04g00613 323 SUPERFAMILY DNA-glycosylase 111 306 IPR011257 GO:0003824|GO:0006281
Cme04g00613 323 PANTHER DNA GLYCOSYLASE SUPERFAMILY PROTEIN 1 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00613 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] - csv:101206397 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02555 Cme-Chr1:33482356 Cme04g00613 Cme-Chr4:5902890 9.87E-69 dispersed
Cme04g00613 Cme-Chr4:5902890 Cme10g00333 Cme-Chr10:2194117 1.18E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g899 Blo01g01553 . Bda01g00542 . Bpe02g00401 . . Bma01g02307 . . Cma01g01890 . Car01g01474 . . Cpe06g00122 . . . . . . . . . . . . . . . Cone4ag1893 Cone7ag1805 . . Lsi04g01641 Csa03g04184 Chy04g00533 . . . . . . . . . . Cmo01g01953 Cmo09g00169 . . . Car09g00154 . Cpe02g00142 . . . . . . . . . . . . . . . . . Cme04g00613
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008489 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00613 Cme_Chr04 FPKM 16.742828 20.366888 10.794401 11.906909 5.296116 4.519997 5.395633 67.902245 53.206448 53.208515