Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00651 ATGATAGAGTTTCAATTCCCCTTCTTTAACCCAAAATCCATCACCATGCTCATCCTTTGGTTTTTCATTTCATGCTACTACCTGTGGCGAAAGTGGAAGCAGTACAAATCAACTAACCTAAAACAGGCTCCCGCACCGCCGGGAGCGTTGCCGATAATCGGCCACCTCCATATGCTCCACAATGTGAAGCTCCCCCATCATGCTCTTGGAGCCATGGCCGATAAATATGGGCCCATCTTCCGCCTGCAGCTCGGGTCCCGGTCGGCTTTGGTGGTGAGCAGCTGGGAAATGGCCAAGGAAAGCATGTGCGTTAACGATGCTGCTGCCGCCTCCCGGCCCGCAGTCTCCGGTACCAAACATTTTTCCTATGACTTTGCAGCATTCGGGTTGGCTCCTTACGGTCCTTACTGGAGGGAGATTCGTAAGGTTACTCACATGGAGCTCCTCTCTAATCCACGCGTTGACCAGTTCAAGAACACCATGTTTGGTGAGGTGAAGACATCATTAACAGAGCTGCACGAAACATGGGCAGCCCAAAAGGATGGATCCGGGCAGGTTGAAGTGGAGATGAAGCGTTGGTTTGGGGATGTGATAGTGAATATGCTTCTGAAGATCATCATCGGAAAACGATGTGTCGGTCCAAACGCCAAGGGAGGTGAAAAACAAGCTAAAGATTTTCAGTTGGCAATTAGGGACTCATTCCATTTGATGGGTCAAGGGTTGTTGAGAGATTATGTTCCTCTGATCGGATGGCTAGGATTTAATGGACAAGTGAAGGTGATGGAGAACATAGCCACACGATTCGACGTGGTACTAAGTGAATGGCTGGATGAGCACAAGCGTAATAGAACTTCTTCATGTTGTGGTAGAAGAGATGGAGATTTTATGGATGCTCTTGTTTCTCTATATGATGGCAAAGGGATTGAAGGTTACTATGATGGTGATACCATCATCAAAGCCACAACCCTTATGGTAGCCGGTGGAACTGAAAGCACGACAGTAACTCTAACATGGGCGATGTCATTGTTACTAAACAACCCACACGTCCTCGAAAGGGCACAGCAAGAGCTCGACACTGTGGTTGGCCGAGACAGACGACTGAAGGAGTCAGACATACCAAATCTTGTTTATTTACAGTCCATAATCAAAGAGACTATGCGAATGTACCCAGCAGGCCCTTTATTAGGACCACGTGAGTTCTACAAGGACTGCATTGTAGCCGGCTACTTTGTCCCAAAAGGCACCCAATTGATCCCAAACCTTTGGAGGATTCAAACAGATCCACGTGTATGGCCCGACCCATTCAAGTTCAAGCCGGAGCGGTTCTTGACAACCCATAAGAATGTGGATTTGAAAGGGAATAATTTTGAGTTGATTCCATTTGGGAGTGGAAGGAGAGGTTGCCCTGGAGCTGCGTTTGGACTTCAAATGGTGCATTTTGCTTTGGCTGGGTTTTTACATTCCTTTGATGTCAGAAACCCGACCAAAGAACCTATCGATATGTCGGAGAATTTCGGAATGGCTAATGAGAAGGTAGTTCCTCTTAATGTTTTGGTCACTTCACGGTTACCTTCTCATCTTTACACAGTAAATTAA 1596 46.99 MIEFQFPFFNPKSITMLILWFFISCYYLWRKWKQYKSTNLKQAPAPPGALPIIGHLHMLHNVKLPHHALGAMADKYGPIFRLQLGSRSALVVSSWEMAKESMCVNDAAAASRPAVSGTKHFSYDFAAFGLAPYGPYWREIRKVTHMELLSNPRVDQFKNTMFGEVKTSLTELHETWAAQKDGSGQVEVEMKRWFGDVIVNMLLKIIIGKRCVGPNAKGGEKQAKDFQLAIRDSFHLMGQGLLRDYVPLIGWLGFNGQVKVMENIATRFDVVLSEWLDEHKRNRTSSCCGRRDGDFMDALVSLYDGKGIEGYYDGDTIIKATTLMVAGGTESTTVTLTWAMSLLLNNPHVLERAQQELDTVVGRDRRLKESDIPNLVYLQSIIKETMRMYPAGPLLGPREFYKDCIVAGYFVPKGTQLIPNLWRIQTDPRVWPDPFKFKPERFLTTHKNVDLKGNNFELIPFGSGRRGCPGAAFGLQMVHFALAGFLHSFDVRNPTKEPIDMSENFGMANEKVVPLNVLVTSRLPSHLYTVN 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6588915 6593509 + MELO3C026486.2.1 Cme04g00651 324912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00651 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
Cme04g00651 531 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PRINTS E-class P450 group I signature 379 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 Pfam Cytochrome P450 44 508 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PANTHER CYTOCHROME P450 82A2 14 528 - -
Cme04g00651 531 Gene3D Cytochrome P450 32 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00651 531 PANTHER CYTOCHROME P450 82C3-RELATED 14 528 - -
Cme04g00651 531 SUPERFAMILY Cytochrome P450 44 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00651 - - - csv:101213457 1030.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00651 Cme-Chr4:6588915 Cme04g00661 Cme-Chr4:6859592 2.10E-158 dispersed
Cme04g00647 Cme-Chr4:6505658 Cme04g00651 Cme-Chr4:6588915 8.15E-38 proximal
Cme04g00648 Cme-Chr4:6521922 Cme04g00651 Cme-Chr4:6588915 2.14E-22 proximal
Cme04g00651 Cme-Chr4:6588915 Cme04g00654 Cme-Chr4:6652981 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g854 . . Bda01g00557 . . . . . . . . Cma09g00185 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01620 Csa03g04164 Chy04g00550 . . . . . . . . . . Cmo01g01942 . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00651
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00651 Cme_Chr04 FPKM 52.314533 57.196892 20.066811 19.531975 43.502502 51.57209 43.79092 23.867567 21.450129 22.481419