Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00654 ATGATGGAGTTCCCATCACCCATCATTATCTTTCTCTTCATTTTTTCTTCCTATTATTTGTCAAGAAAGTGGCAGAAAAATAAGAAAACTAAGGGAGTTACTGAGGGAAAGAAGGCCCCTTCGCCGCGGGGAGCGTTGCCGATAATCGGCCACCTCCATCTGCTGAACAAGCGCGGGAAGCTTCCACACCATGTTCTTGGAGCCATGGCTGATAAATATGGCCCCATCTTTAGGTTGAACCTCGGCTCGCGCCCGGCTTTAGTTGTTAGTAATTGGGAAATGGCTAAAGAAAGTATGTGTATTAATGACGCGGCCGCCGCCTCTCGTCCAGAGCTCTCAGTGTCTAAGAATTTCTCTTATAACTTCGCCATGTTTGGGTTGGCTTCTTACAGTTCTTACTGGCGTGATATGCGTAAAATTACCCACTTGGAGCTCCTCTCCAATCCACGAGTCGATCAGGTCAAGAGATCGATGTTAGGTGAGATGAGCACTTCGTCGAGAGAGTTATACACAAGATGGGGTGGAGAAAGGAAGAAATTGGAGGAGATTTCAGTTGAAATTAAACATTGGTTTGGGGATGCAATACTGAATATGCTTCTTAAGGTCATCATAGGGAAAAGATGTGTGGGTCCAAATGCTCCAGAGGGAAATGAAAATGATGCAAGAGCATTGCAAATGGGAATTAGGGAGTCTTTCCATTTGATGGGTGAAGGGTTATTGAGAGACTATATTCCTTTGGTTACAAAGCTTGGATTTGATGGTCATGTCAAGGCTATGGAGAAAATAGCCAAACGAATGGATACCATTCTTCAACGTTGGTTCGAAGAACACATGCACGATAGATCCACTAATGATTTGGATAGAAAAGATGGCGATTTTATGGATTCATTAATTTCGTTATCTCAGGCTAATCAACTTCCGAATAACTATGATCAAACGACAATTATCAAAGCCACGACTTTGAACGTGATTGCGGGAGGAACTGAAAGCAGCACAGTGACTCTAACATGGGCCGTGTCTTTATTACTAAACAACCCAAAGGCCTTAGAAAAGGCTTATGAAGAACTCGACCAAGTTGTAGGAAGAGACAGGCAGCTGAACGAGTTGGACATAAGCAATCTTGCTTATTTACAAGCTATTGTGAAAGAAACAATGCGACTGTACCCAGCAGGGCCTTTACTGGGACCTCGTGAATTCTACAAGGATTGTTTTGTGGCCGGCTATTTTGTCCCCAAGGGCACTCAATTGATCCCCAACATTTGGAAGATCCAAACTGACCCTCGAGTTTGGCCCGACCCTTTCGTGTTCAAGCCAGAGCGATTTTTGACAACACATAAAGACGTGGATTTGAAAGGGAATAATTTTGAGTTGATTCCATTTGGGAGTGGAAGGAGAGGGTGTCCTGCAGTTTCGTTTGGACTTCAAATGGTGCATTTTGCTTTGGCTGGGTTTTTACATTCTTTTCACATTAAAAATCCATCGGGAGAAGAGATTGATATGAGGGAGGATTTTGGGATGGCCAATGAGAAAGTTGTTCCGCTTAATGTTTTGGTTACCCCTCGATTACCTTTGCATCTTCACACATGA 1587 43.48 MMEFPSPIIIFLFIFSSYYLSRKWQKNKKTKGVTEGKKAPSPRGALPIIGHLHLLNKRGKLPHHVLGAMADKYGPIFRLNLGSRPALVVSNWEMAKESMCINDAAAASRPELSVSKNFSYNFAMFGLASYSSYWRDMRKITHLELLSNPRVDQVKRSMLGEMSTSSRELYTRWGGERKKLEEISVEIKHWFGDAILNMLLKVIIGKRCVGPNAPEGNENDARALQMGIRESFHLMGEGLLRDYIPLVTKLGFDGHVKAMEKIAKRMDTILQRWFEEHMHDRSTNDLDRKDGDFMDSLISLSQANQLPNNYDQTTIIKATTLNVIAGGTESSTVTLTWAVSLLLNNPKALEKAYEELDQVVGRDRQLNELDISNLAYLQAIVKETMRLYPAGPLLGPREFYKDCFVAGYFVPKGTQLIPNIWKIQTDPRVWPDPFVFKPERFLTTHKDVDLKGNNFELIPFGSGRRGCPAVSFGLQMVHFALAGFLHSFHIKNPSGEEIDMREDFGMANEKVVPLNVLVTPRLPLHLHT 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6652981 6656558 + MELO3C026488.2.1 Cme04g00654 324915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00654 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506|GO:0016705
Cme04g00654 528 Gene3D Cytochrome P450 24 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 Pfam Cytochrome P450 40 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PANTHER CYTOCHROME P450 82C3-RELATED 37 526 - -
Cme04g00654 528 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00654 528 PANTHER CYTOCHROME P450 37 526 - -
Cme04g00654 528 SUPERFAMILY Cytochrome P450 40 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00654 - - K23136 csv:101213214 984.171
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00654 Cme-Chr4:6652981 Cme04g00661 Cme-Chr4:6859592 1.77E-153 dispersed
Cme07g00217 Cme-Chr7:1430529 Cme04g00654 Cme-Chr4:6652981 3.07E-35 dispersed
Cme04g00651 Cme-Chr4:6588915 Cme04g00654 Cme-Chr4:6652981 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g852 . . . Bda03g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01618 Csa03g04163 Chy04g00552 . . . . . . . . . . . Cmo09g00180 . . . . . . Bhi09g02046 . . . . . . Cla05g01981 . . . . . . . . . Cme04g00654
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00654 Cme_Chr04 FPKM 26.178696 29.291113 28.171839 25.109594 30.465763 26.923422 32.016525 13.833954 13.429586 14.584001