Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00665 ATGGAAAAACCGCCTCACGCCGTTGCCGGAGTAATCTTTGCACTTGTCTTCATTATCTATCTTCTTTTCATCGTGTCTAGGAGATCCGCAGGTCATCCTAAGAGATTCCCACCAGAAGCCGATGGCGCTTGGCCAGTGATCGGCCACCTCCATCTTCTAAATGCAAGTGAGCCAATCCACATAACATTGGCCAAAATGGCCGATGCGTATGGACCAATATTCACGTTCAGATTCGGTATGAAAAGGGCGTTGATTGTGAGCAATTGGGAAATAGCGAAAGAATGTTTTACTACAAACGATAGAATCTTTGCGTCTCGTCCAAAGCAACTTGCATCAAAGCTTCTTGCCTATGACTACGCAATGATGGTGTTCAGCCCTTACAATCAACACTGGCGCTATGTACGCAAACTAGCCATGCTCGGACTCTTCACTAACCAACGCATCGAGCAGCTTGAACACGTTAGAGCAGTCGAAGTTCATAGTTGGATGAAGGAACTTTATGAGTTATATTGGCTCAAAAATAACAATAACAAAAGTGAGAAAGTTGTGGTGGAAATGAAGAAATGGTTTGTAGACATAACCATCAACACCATGTTCAAGATGGTGGTCGGAAAGCGATTTGCGACTGCCTTTGACGACCATGTAAGCCGTGAAAAGTGTCGAAAGGCGTTGGGGGGTTTCTTTGAATTCTTTATAAAATTCATTCCTTCAGAATCGTTTTCGTTTTTTAGTTGGTTGGATTTAGGAGGACACGAGAAAGCGATGAAGAAGACTGCACAAATATTAGATGAGACTTTTCACAAATTCCTCCAAGAACATCGTGAGAGGAGAGATTATTGCAGTACTGGAGAGATGGAAGAAAAAGACTTCATGGATGTAATGATTTCTAGTGTTGAAGATGAGGATGGAGAGCAGCTCAACTACGATGCTGATACAATTATCAAAGCCACGTGCTTGAATGTGATATTAGGTGGAATTGACACTGCAACAATTACAATGTCATGGGCTCTTTCTTTACTTCTCAACAATGAAAATGCATTAAAGAAGGCCCAACTTGAGTTAAACGAACAAGTTGGAAGAGCAAGACAAGTGAAAGAGACGGATTTGAAAAATCTACCATATCTCCAAGCTATTGTTAAGGAAACTCTACGATTACACCCACCTGGACCACTCTTAGTCCCTCATGAGTCAATAGAAGATTGTACAATTGGTAGCCACCACATTCCAAAAGGGACCCGCCTCATTGTCAATGCTCAAAAGCTCCAAAAAGACCCACTGGTTTGGGACAATCCATGTGAATTTCGACCGGAAAGATTTATAACAAACCAAAACAATTTTGATGTTAGAGGACAAAATCCTCAATTGATACCATTTGGAAACGGTCGAAGAATGTGCCCGGCCATCTCGTTCGCCCTTCAAATGATACATCTTACGCTATCCAACTTGCTACATGGGTTCAAACTTGATAGACCATCACAAGAACTTGTTGACATGGAAGAGAGTTGTGGATTGGCCAGTGGTAGAAAAGCACCGCTCGAAGTTGTTTTAACTCCGCGACTACCCGCTTCTGTTTATGAGTAA 1581 42.25 MEKPPHAVAGVIFALVFIIYLLFIVSRRSAGHPKRFPPEADGAWPVIGHLHLLNASEPIHITLAKMADAYGPIFTFRFGMKRALIVSNWEIAKECFTTNDRIFASRPKQLASKLLAYDYAMMVFSPYNQHWRYVRKLAMLGLFTNQRIEQLEHVRAVEVHSWMKELYELYWLKNNNNKSEKVVVEMKKWFVDITINTMFKMVVGKRFATAFDDHVSREKCRKALGGFFEFFIKFIPSESFSFFSWLDLGGHEKAMKKTAQILDETFHKFLQEHRERRDYCSTGEMEEKDFMDVMISSVEDEDGEQLNYDADTIIKATCLNVILGGIDTATITMSWALSLLLNNENALKKAQLELNEQVGRARQVKETDLKNLPYLQAIVKETLRLHPPGPLLVPHESIEDCTIGSHHIPKGTRLIVNAQKLQKDPLVWDNPCEFRPERFITNQNNFDVRGQNPQLIPFGNGRRMCPAISFALQMIHLTLSNLLHGFKLDRPSQELVDMEESCGLASGRKAPLEVVLTPRLPASVYE 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6982534 6990235 + MELO3C026493.2.1 Cme04g00665 324926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00665 526 PANTHER CYTOCHROME P450 82C3-RELATED 34 526 - -
Cme04g00665 526 Gene3D Cytochrome P450 23 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 Coils Coil 347 367 - -
Cme04g00665 526 SUPERFAMILY Cytochrome P450 43 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Cme04g00665 526 PANTHER CYTOCHROME P450 34 526 - -
Cme04g00665 526 Pfam Cytochrome P450 38 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS E-class P450 group I signature 313 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00665 526 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00665 - - - csv:101208575 963.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00665 Cme-Chr4:6982534 Cme04g00668 Cme-Chr4:7100999 0 dispersed
Cme04g00665 Cme-Chr4:6982534 Cme04g00667 Cme-Chr4:7061271 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g849 . . . . . . . . . . Cma01g01881 Cma09g00189 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04160 . . . . . . . . . . . Cmo01g01940 Cmo09g00184 . . . . . . Bhi09g02034 . . . . . . Cla05g01984 . . . . . . . . . Cme04g00665
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00665 Cme_Chr04 FPKM 6.809876 6.407017 4.664127 4.420874 3.803597 6.573895 7.40802 1.230115 2.328225 0.838404