Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00667 ATGGGACAGCTCAACACCCTCTTCGGAATAATCTTTCCTCTTCTCATCCTTTTCTATGTTCTCTTCACTTGGTCCCGGAGATCCGTCGCTCAACGGAAGAGGCTCCCACCGAAGGCTGGTGGCGCTTGGCCAGTGATTGGCCACCTCCATCTACTAAATGCAAGTGAGCCAACTCACATAACATTCGCAAAAATGGCGGATGCATATGGACCAATGTTCACATTTAGGTTTGGTATGAATGAGGCGTTGATTGTAAGCAATTGGGAACTAGCAAAAGAGTTCTTTACGACAAACGACAGAATCTTCGCGTCTCGTCCAAAGCTTGTAGCCTCAAAACTCCTTGCGTATGACTATGCCATGATGGGGTTCAGCCCCTACAGTCCACACTGGCGCCATGTACGAAAAATAGCCACACTCGAACTCCTGACGAACCATCGTGTGGCCCAGCTCCAATACATAAGAGCATTTGAGATCAAGACATGGATGAAAGAACTTTATGAGTTATGGAGGCTCAATAACAAAGGTGAAAAAGTTGTGGTGGAAATGAAAAAGAGATTGGCAGACATAACGCTGAATACAATATTCAAGATGGTGATTGGGAAGAGATTTTCCTCTATAGAGTATGGTAATGAAAAGTTTCAAAATGTGTTAATAGAGTTCTTTGGATTGTTTGGTATATTTATTCCATCGGATTCCTTTCCATTTCTGAGTTGGTTGGACTTGGGAGGACATGAGAAGGCCATGAAGAAGACAGCCAAAATAATAGATGAGGTGTTTGATAAATTCCTCAAAGAGCGTCGGGAGAGGATAAATAATTTTGGTGAAGTGGAGGCGGCGGAAAAGGGATTCATGGATATTATGATTTCTACAGTTCAAGACGATGGACAACATTTCAATTGCCATGTTGATACTGTAATTAAGGCTACATGCTTGAATATGATATTAGGTGGATTTGACACAACAACAATTACAATGACATGGGCTCTTTGTTTACTTCTCAACAATAAAGAAGAACTCAAGAAGGCTCAAGTTGAATTAAATGAACAAGTTGGGAGAGAAAGACAAGTGGAAGAAACAGATTTAAAAAACCTACCATATCTCCAAGCTATCGTTAAAGAAACTCTACGATTGTATCCTGCTGCACCACTTTTAGTCCCGCATGAATCTATAGAAGATTGTACAGTTGCTGGGTATCACATCCCTAAAGGGACACGCCTCATAGTTAATGTTCAAAAACTTCAAAAAGACCCAGTTGTTTGGCAGGATCCATTTGAATTTCGACCTGAAAGATTTCTAACAAGTCAAAAGAATTTTGATGTTAGGGGACAACATCCCCAATTCATACCGTTTGGAAATGGTCGAAGGATGTGCCCTGCAATCTCATTTGCACTTCAAATAATCTATCTTACACTTTCAAACTTTCTTCATGGGTTTGAAATTGATAGACCATCAGAAGAACTGCTTGACATGGAAGAGAGTTTTGGATTGACAAGCCTTAAAAAAACCCCACTCGAAGTTGTTTTAACTCCAAGGCTACCTTCACATGTTTATGGTTAA 1557 40.66 MGQLNTLFGIIFPLLILFYVLFTWSRRSVAQRKRLPPKAGGAWPVIGHLHLLNASEPTHITFAKMADAYGPMFTFRFGMNEALIVSNWELAKEFFTTNDRIFASRPKLVASKLLAYDYAMMGFSPYSPHWRHVRKIATLELLTNHRVAQLQYIRAFEIKTWMKELYELWRLNNKGEKVVVEMKKRLADITLNTIFKMVIGKRFSSIEYGNEKFQNVLIEFFGLFGIFIPSDSFPFLSWLDLGGHEKAMKKTAKIIDEVFDKFLKERRERINNFGEVEAAEKGFMDIMISTVQDDGQHFNCHVDTVIKATCLNMILGGFDTTTITMTWALCLLLNNKEELKKAQVELNEQVGRERQVEETDLKNLPYLQAIVKETLRLYPAAPLLVPHESIEDCTVAGYHIPKGTRLIVNVQKLQKDPVVWQDPFEFRPERFLTSQKNFDVRGQHPQFIPFGNGRRMCPAISFALQIIYLTLSNFLHGFEIDRPSEELLDMEESFGLTSLKKTPLEVVLTPRLPSHVYG 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7061271 7063606 + MELO3C026494.2.1 Cme04g00667 324928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00667 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Cme04g00667 518 SUPERFAMILY Cytochrome P450 42 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PANTHER CYTOCHROME P450 33 517 - -
Cme04g00667 518 Pfam Cytochrome P450 37 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS E-class P450 group I signature 189 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme04g00667 518 PANTHER CYTOCHROME P450 82C3-RELATED 33 517 - -
Cme04g00667 518 Gene3D Cytochrome P450 21 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00667 - - - csv:101212976 957.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00661 Cme-Chr4:6859592 Cme04g00667 Cme-Chr4:7061271 0 dispersed
Cme04g00662 Cme-Chr4:6890499 Cme04g00667 Cme-Chr4:7061271 0 dispersed
Cme04g00667 Cme-Chr4:7061271 Cme04g00671 Cme-Chr4:7194569 1.13E-148 dispersed
Cme04g00665 Cme-Chr4:6982534 Cme04g00667 Cme-Chr4:7061271 0 proximal
Cme04g00667 Cme-Chr4:7061271 Cme04g00668 Cme-Chr4:7100999 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g847 . Blo12g00929 . Bda03g00235 . Bpe04g00199 Bma04g00187 . . . . Cma09g00190 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01612 Csa03g04159 Chy04g00558 . . . . . . . . . . Cmo01g01939 Cmo09g00185 . . . . . . Bhi09g02032 . . . . . . Cla05g01986 . . . . . . . . . Cme04g00667
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00667 Cme_Chr04 FPKM 2.254847 3.498863 2.183743 2.142056 1.578088 1.804863 1.080266 1.761798 1.643485 1.576072