Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00673 ATGTCCTCCGAAGACATCAATGGCCTCGACTCCCACCTCGTCTTCCAAAACGAATCCCTCCCTTTCAATTGCTCCTCCACCCCCCACCGACGCCTCCCCGACCCACCTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGTCGTCGACCGTGACCGATTCTTTTCCCAACAGGGAGAGGATTTCCGCCGGAATGTTTTCGGTCACAACCGGAATTGGAATGGGACAGCGAGAACTGGAAGTGGTAAAGGATCGGATGAGGAAGATGATGACGACGACGACGACGATGAAGATGAAGTCGATGATGGCGATGATGATGTTGAAGGGCTTGTTTCTTTGGATGATGTCAATAAGTGTAGTAAAACTGCTAACCCCATTGACAATAACAATGATAGAAGTGATCAGAGTAGTGAGGGGTTGAAGAATGGGATAAACAAATTGGGAAATGGGAAGCTTAAGCAGCATTCTTCTTTTTGTGGGACTTTGTTAGTCAAGGATGCTTTGGTTGGGTCTTCCGGAGCAACTCAAAGTGAAAACAATCCGCAGGCAAGGTTGAGGAACTATCCAAATGCTGTTACAGTTGCAGAACCTGATAGTGAAGCTTATTATTCTCAGTATTTGCAAAGCAATGAAGGGTCTGCTTCTGGGCAGAAGGATTTGAGTACGGAAAATGGATGTGGTTTCGGGAGAAGGGATGTTTCGTTTTCAGGAGAGCCCGGAGAGTCTTTGAGAGCAATTCTCACTGACCCTGTGACGGGCGCGCTCATGAATGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAGATCTTGTTACTCATGCTCTCAGTCAGTTTCTGAAGACTCTGTTGCCCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCTGCCGCGAAGAAGAATTATTATTTCACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGTGTGGTTATGGTGATTTGACTCTCATGGATACTCAAAGAGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATAGGGTAATTATTAAGGGGAACAAGAGGACACCACAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACGCTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCACTTGCAAAGGTTCCAAATGATGCAACAACAAAGATGATAACAAGGAAGATCACGCCGAATTGGCTTTAG 1290 46.59 MSSEDINGLDSHLVFQNESLPFNCSSTPHRRLPDPPPKTRELCGFMDDKLFPVVDRDRFFSQQGEDFRRNVFGHNRNWNGTARTGSGKGSDEEDDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCSKTANPIDNNNDRSDQSSEGLKNGINKLGNGKLKQHSSFCGTLLVKDALVGSSGATQSENNPQARLRNYPNAVTVAEPDSEAYYSQYLQSNEGSASGQKDLSTENGCGFGRRDVSFSGEPGESLRAILTDPVTGALMNDAMILPCGHSFGSGGIQHVLRVRSCYSCSQSVSEDSVAQNLSLQAAVQAFCREEELLFHRSPKRRRERFEQDKCGYGDLTLMDTQRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDATTKMITRKITPNWL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7232995 7237957 + MELO3C018256.2.1 Cme04g00673 324934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00673 429 MobiDBLite consensus disorder prediction 19 39 - -
Cme04g00673 429 MobiDBLite consensus disorder prediction 91 115 - -
Cme04g00673 429 SUPERFAMILY RING/U-box 247 318 - -
Cme04g00673 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 43 429 - -
Cme04g00673 429 MobiDBLite consensus disorder prediction 122 147 - -
Cme04g00673 429 MobiDBLite consensus disorder prediction 71 147 - -
Cme04g00673 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 318 IPR013083 -
Cme04g00673 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 43 429 - -
Cme04g00673 429 ProSiteProfiles U-box domain profile. 247 319 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00673 Cme-Chr4:7232995 Cme10g01252 Cme-Chr10:13251876 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00673 - - csv:101213937 792.341