Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00673 ATGTCCTCCGAAGACATCAATGGCCTCGACTCCCACCTCGTCTTCCAAAACGAATCCCTCCCTTTCAATTGCTCCTCCACCCCCCACCGACGCCTCCCCGACCCACCTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGTCGTCGACCGTGACCGATTCTTTTCCCAACAGGGAGAGGATTTCCGCCGGAATGTTTTCGGTCACAACCGGAATTGGAATGGGACAGCGAGAACTGGAAGTGGTAAAGGATCGGATGAGGAAGATGATGACGACGACGACGACGATGAAGATGAAGTCGATGATGGCGATGATGATGTTGAAGGGCTTGTTTCTTTGGATGATGTCAATAAGTGTAGTAAAACTGCTAACCCCATTGACAATAACAATGATAGAAGTGATCAGAGTAGTGAGGGGTTGAAGAATGGGATAAACAAATTGGGAAATGGGAAGCTTAAGCAGCATTCTTCTTTTTGTGGGACTTTGTTAGTCAAGGATGCTTTGGTTGGGTCTTCCGGAGCAACTCAAAGTGAAAACAATCCGCAGGCAAGGTTGAGGAACTATCCAAATGCTGTTACAGTTGCAGAACCTGATAGTGAAGCTTATTATTCTCAGTATTTGCAAAGCAATGAAGGGTCTGCTTCTGGGCAGAAGGATTTGAGTACGGAAAATGGATGTGGTTTCGGGAGAAGGGATGTTTCGTTTTCAGGAGAGCCCGGAGAGTCTTTGAGAGCAATTCTCACTGACCCTGTGACGGGCGCGCTCATGAATGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAGATCTTGTTACTCATGCTCTCAGTCAGTTTCTGAAGACTCTGTTGCCCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCTGCCGCGAAGAAGAATTATTATTTCACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGTGTGGTTATGGTGATTTGACTCTCATGGATACTCAAAGAGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATAGGGTAATTATTAAGGGGAACAAGAGGACACCACAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACGCTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCACTTGCAAAGGTTCCAAATGATGCAACAACAAAGATGATAACAAGGAAGATCACGCCGAATTGGCTTTAG 1290 46.59 MSSEDINGLDSHLVFQNESLPFNCSSTPHRRLPDPPPKTRELCGFMDDKLFPVVDRDRFFSQQGEDFRRNVFGHNRNWNGTARTGSGKGSDEEDDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCSKTANPIDNNNDRSDQSSEGLKNGINKLGNGKLKQHSSFCGTLLVKDALVGSSGATQSENNPQARLRNYPNAVTVAEPDSEAYYSQYLQSNEGSASGQKDLSTENGCGFGRRDVSFSGEPGESLRAILTDPVTGALMNDAMILPCGHSFGSGGIQHVLRVRSCYSCSQSVSEDSVAQNLSLQAAVQAFCREEELLFHRSPKRRRERFEQDKCGYGDLTLMDTQRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDATTKMITRKITPNWL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7232995 7237957 + MELO3C018256.2.1 Cme04g00673 324934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00673 429 MobiDBLite consensus disorder prediction 19 39 - -
Cme04g00673 429 MobiDBLite consensus disorder prediction 91 115 - -
Cme04g00673 429 SUPERFAMILY RING/U-box 247 318 - -
Cme04g00673 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 43 429 - -
Cme04g00673 429 MobiDBLite consensus disorder prediction 122 147 - -
Cme04g00673 429 MobiDBLite consensus disorder prediction 71 147 - -
Cme04g00673 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 318 IPR013083 -
Cme04g00673 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 43 429 - -
Cme04g00673 429 ProSiteProfiles U-box domain profile. 247 319 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00673 - - - csv:101213937 792.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00673 Cme-Chr4:7232995 Cme10g01252 Cme-Chr10:13251876 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g02054 . 2 720 Plant U-box Gene Family AT5G57035 53.9 5.1e-226 781.2
Cme04g00673 . 196 429 Plant U-box Gene Family AT5G05230 58.2 2.8e-70 262.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00673 Cme_Chr04 FPKM 3.653258 4.257193 8.622805 8.349837 6.126025 3.703495 5.683982 10.18116 9.978114 10.498743