Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00674 ATGAACACACCATCTTCCTTCCCGGACCTCTCCTTGCAGATCAGCCTTCCGATGTCGACACTGCCATGTGAGGCCAAGGCCATCAAGCCACAAAGCTCAACCACCGTGGATTCGAGTTCCAGTGGCAAAAGTGATTTGAGCCATGAAAGTGGTCTCTTCCATCTAGGGTTTGAAGCGGGAGATTTGGATGGTCCTCTTCGTCGTCCTCACCAAGCCTGTTGTAATGTGCGTGACCACCGGGATTTCAAAAGAAGCAGAGGCAGGGTCGGGTGTGGAGTAAGAAGAAACATCCGAGCTCCAAGAATGAGATGGACTACAACTCTTCATGCTCATTTTGTACATGCCGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTGTTGGAGCTTATGAATGTCAAGGACCTAACCCTAGCTCACGTCAAAAGCCATTTGCAGATGTACAGAACAGTGAAAAATACTGTGAAGGAAACAGCAGATGATTGTGGAAGGCCTGAGGTTGAAGGAGATGGGATGGTTTTATCTTCTTGTGTTAAAAAATCTAACTTTGGATCAAATCATTTCCAGAGAATCCAAAGAAGTAGTTTTGTAACATCAATGCACAAGAGTTGCGACACAACCAAGTCAAACGCCGACGCTTTCGCTAAATCTAGAGGAATTAAGGTTGAAGGAAGCAGTGGGGATTATCACGAGGCAATTACAATGGAGAGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTTTGGTGATCCAAAGGAGCTTGCCCTTCTCAATTGCTAA 804 45.4 MNTPSSFPDLSLQISLPMSTLPCEAKAIKPQSSTTVDSSSSGKSDLSHESGLFHLGFEAGDLDGPLRRPHQACCNVRDHRDFKRSRGRVGCGVRRNIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKETADDCGRPEVEGDGMVLSSCVKKSNFGSNHFQRIQRSSFVTSMHKSCDTTKSNADAFAKSRGIKVEGSSGDYHEAITMERINLEFTLGRPSWQLDFGDPKELALLNC 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7270936 7275229 - MELO3C018255.2.1 Cme04g00674 324935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00674 267 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 100 153 IPR006447 GO:0003677
Cme04g00674 267 MobiDBLite consensus disorder prediction 27 47 - -
Cme04g00674 267 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 5 209 - -
Cme04g00674 267 SUPERFAMILY Homeodomain-like 97 154 IPR009057 -
Cme04g00674 267 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 209 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cme04g00674 267 Gene3D - 99 156 - -
Cme04g00674 267 Pfam Myb-like DNA-binding domain 101 152 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00674 - - - csv:101214179 485.337
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01993 Cme04g00674 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01993 Cme-Chr3:27705381 Cme04g00674 Cme-Chr4:7270936 7.82E-44 dispersed
Cme04g00674 Cme-Chr4:7270936 Cme12g01809 Cme-Chr12:24557665 7.04E-36 dispersed
Cme04g00674 Cme-Chr4:7270936 Cme04g00145 Cme-Chr4:1097100 2.40E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme06g01406 . 298 500 G2-like Transcription Factor Family AT5G16560 54.5 1.6e-45 180.6
Cme04g00145 . 298 503 G2-like Transcription Factor Family AT5G16560 50.9 6.4e-39 158.7
Cme04g00674 CCT 1 159 G2-like Transcription Factor Family AT5G42630 59.0 4.3e-37 151.8
Cme02g01289 CCT 4 340 G2-like Transcription Factor Family AT2G03500 51.4 6.1e-80 295.0
Cme03g00787 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 1.3e-51 200.3
Cme10g00288 . 19 255 G2-like Transcription Factor Family AT1G25550 53.4 2.6e-47 186.0
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT5G05090 55.7 2.5e-76 282.3
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT5G05090 55.9 4.9e-72 268.1
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme01g01493 CCT 1 379 G2-like Transcription Factor Family AT1G79430 53.1 4.0e-85 312.0
Cme11g01645 CCT 1 223 G2-like Transcription Factor Family AT1G79430 72.3 4.9e-75 278.5
Cme04g01787 . 72 273 G2-like Transcription Factor Family AT5G18240 52.7 1.2e-40 164.1
Cme08g01008 . 54 270 G2-like Transcription Factor Family AT2G01060 65.2 1.2e-53 206.8
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT3G10760 63.5 6.4e-93 337.8
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT3G10760 59.2 4.6e-83 305.1
Cme08g01427 . 1 203 G2-like Transcription Factor Family AT2G40970 62.1 2.3e-63 239.2
Cme04g02132 . 1 199 G2-like Transcription Factor Family AT2G40970 63.3 1.1e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008523 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41160 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00674 Cme_Chr04 FPKM 3.361244 3.90333 12.019222 11.015046 25.695736 25.105907 27.644909 0.0 0.0 0.0