Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00674 ATGAACACACCATCTTCCTTCCCGGACCTCTCCTTGCAGATCAGCCTTCCGATGTCGACACTGCCATGTGAGGCCAAGGCCATCAAGCCACAAAGCTCAACCACCGTGGATTCGAGTTCCAGTGGCAAAAGTGATTTGAGCCATGAAAGTGGTCTCTTCCATCTAGGGTTTGAAGCGGGAGATTTGGATGGTCCTCTTCGTCGTCCTCACCAAGCCTGTTGTAATGTGCGTGACCACCGGGATTTCAAAAGAAGCAGAGGCAGGGTCGGGTGTGGAGTAAGAAGAAACATCCGAGCTCCAAGAATGAGATGGACTACAACTCTTCATGCTCATTTTGTACATGCCGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTGTTGGAGCTTATGAATGTCAAGGACCTAACCCTAGCTCACGTCAAAAGCCATTTGCAGATGTACAGAACAGTGAAAAATACTGTGAAGGAAACAGCAGATGATTGTGGAAGGCCTGAGGTTGAAGGAGATGGGATGGTTTTATCTTCTTGTGTTAAAAAATCTAACTTTGGATCAAATCATTTCCAGAGAATCCAAAGAAGTAGTTTTGTAACATCAATGCACAAGAGTTGCGACACAACCAAGTCAAACGCCGACGCTTTCGCTAAATCTAGAGGAATTAAGGTTGAAGGAAGCAGTGGGGATTATCACGAGGCAATTACAATGGAGAGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTTTGGTGATCCAAAGGAGCTTGCCCTTCTCAATTGCTAA 804 45.4 MNTPSSFPDLSLQISLPMSTLPCEAKAIKPQSSTTVDSSSSGKSDLSHESGLFHLGFEAGDLDGPLRRPHQACCNVRDHRDFKRSRGRVGCGVRRNIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKETADDCGRPEVEGDGMVLSSCVKKSNFGSNHFQRIQRSSFVTSMHKSCDTTKSNADAFAKSRGIKVEGSSGDYHEAITMERINLEFTLGRPSWQLDFGDPKELALLNC 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7270936 7275229 - MELO3C018255.2.1 Cme04g00674 324935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00674 267 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 100 153 IPR006447 GO:0003677
Cme04g00674 267 MobiDBLite consensus disorder prediction 27 47 - -
Cme04g00674 267 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 5 209 - -
Cme04g00674 267 SUPERFAMILY Homeodomain-like 97 154 IPR009057 -
Cme04g00674 267 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 209 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cme04g00674 267 Gene3D - 99 156 - -
Cme04g00674 267 Pfam Myb-like DNA-binding domain 101 152 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01993 Cme04g00674 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01993 Cme-Chr3:27705381 Cme04g00674 Cme-Chr4:7270936 7.82E-44 dispersed
Cme04g00674 Cme-Chr4:7270936 Cme12g01809 Cme-Chr12:24557665 7.04E-36 dispersed
Cme04g00674 Cme-Chr4:7270936 Cme04g00145 Cme-Chr4:1097100 2.40E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41160 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00674 - - csv:101214179 485.337