Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00679 ATGTCGGACACGGAGTCTCGCCGGGAAATGGTGGCCGCCAGACGGCCTTCCTTCTATACTTTCTATTCCTCCACTCTTTGTTCAGAACGACTGAAAGTTCCTTTGAAATTTGTCAAACACTTGGAAGAAATAATAGGCCGATCAGTTGTGTTAATTGGTCCTAGTGGCCAAACATGGCTCGTTAACTTGATCCAGGAGAATGACAACTTGTTCTTCTGTGAAGGATGGCCAACTTTTGCACGAGATCACGCTCTAGAATGTGGTGATTTTTTGGTTTTTAGATATGATAGCGAGTTGAATTTCAATGTGCGAGTTTTTGATCAGAGTGCATGTGAGAAAGAAGGTGCATTTCATTCTCAATGCAGACAAGATAAGACTGGCCATAAAAGAGACAGGGAGGAGGATCATTCATCCCGGGAGACATGCGAGGAAGATGTGACAAAGAAAACGAGGACCATTTCTGATGTAAATTCAGATTGCAGCAGGGAGAACCTACCGTGTAAGTTGAGTTCTACAATAAGAGCTGTTGAGGATCATAAGAGTGTAGCTGGTCAGAATGGGATCAGTAAAGTTGTTGACATAACTACACACGATAAAATTCCAGCCTTACCACTATCATTTCAGGATGAAAAGAAAGTTTCCCAGTCTTTTAGCTCCGACTTTCCATATTTTGTGAGAATCATGAAAAGCTTCAACATTCGTGGTTCATACACATTGGGGGAATCCTGGACAGTGAATTCTGTTCCTACAACGAGAGTGCATACAAGTCATACTCTCTGTGGAGGATGGATGGCCTTTGTGCGTGGGAATGACATCAACATGGGTGATATTTGTGTTTTTGAACTTGTCCGGGATTGTGAATTGCGTGTTCACATCTTCAGGGTTGGAAAGGAAATATCTGAGGATCAAAGTGGAAATGGATCTTTTAATAGGCTAGGTGCTGGCCATGCAGTAATTCCTCGTAAAGCTCTCAAAGGTTTGCCAAAGAAAATGAATGGGAACTCCCATAAAGTTCATTCGAAACGCTCCAAAAGGATTGAAGTACTGGATAAAAAATGTTTGAAATCATGGCAAGAACCTTTCTGCAATGATGCTAAGAAACATTCTAGTGCAAAAAAGGTCTCTACTAAAGTCATGGTTTGTTCTCCATCAAAGAAACCGTCTAAACGTTTGGTTAATCGGAGAACCAGTGTCAAAGGTGATCTCATATTACCAGCTAGACCTGGTTTGCGAGCAATGTTGGCTCGAGATGAAGAAAGGGCCGCTAAGTCGTTTGTTTCTTGTTTTCCAAGTTTTGTCAGAATCATGAAAAAGTTCAACACAAGTGGTTCATATACTCTGAAAATCCCTCATCAGTTTTCTTCAGCACATTTCCCTAACAGCAGAACCGAGATTGTCCTTCGTGGTCCAAATGGGGGATGTTGGATTGTTAACTCAGTACCGGACTCAATGGGGCGAATGATGCATACCTTTTGTGGTGGTTGGATGTCGTTTGTTCGTGACAATGGTATCCAAATGGGGGATATCTGCATATTCGAACTTGTGGGCAAGTGTGAATTGTTTGTACATGTAACCGGAGCCGGTAAGAAAGGGTTTGAGAGCAGTGAAGCTACAACTTGTAGTGAATTAGCTATTGTACCAACGACAAGCAATCATCCTTCTCTATAA 1668 42.03 MSDTESRREMVAARRPSFYTFYSSTLCSERLKVPLKFVKHLEEIIGRSVVLIGPSGQTWLVNLIQENDNLFFCEGWPTFARDHALECGDFLVFRYDSELNFNVRVFDQSACEKEGAFHSQCRQDKTGHKRDREEDHSSRETCEEDVTKKTRTISDVNSDCSRENLPCKLSSTIRAVEDHKSVAGQNGISKVVDITTHDKIPALPLSFQDEKKVSQSFSSDFPYFVRIMKSFNIRGSYTLGESWTVNSVPTTRVHTSHTLCGGWMAFVRGNDINMGDICVFELVRDCELRVHIFRVGKEISEDQSGNGSFNRLGAGHAVIPRKALKGLPKKMNGNSHKVHSKRSKRIEVLDKKCLKSWQEPFCNDAKKHSSAKKVSTKVMVCSPSKKPSKRLVNRRTSVKGDLILPARPGLRAMLARDEERAAKSFVSCFPSFVRIMKKFNTSGSYTLKIPHQFSSAHFPNSRTEIVLRGPNGGCWIVNSVPDSMGRMMHTFCGGWMSFVRDNGIQMGDICIFELVGKCELFVHVTGAGKKGFESSEATTCSELAIVPTTSNHPSL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7383975 7387767 - MELO3C018249.2.1 Cme04g00679 324940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00679 555 Gene3D - 9 111 IPR015300 -
Cme04g00679 555 Gene3D - 203 296 IPR015300 -
Cme04g00679 555 ProSiteProfiles B3 DNA-binding domain profile. 240 296 IPR003340 GO:0003677
Cme04g00679 555 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 6 239 - -
Cme04g00679 555 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 240 308 - -
Cme04g00679 555 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 240 308 IPR044837 -
Cme04g00679 555 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 325 542 - -
Cme04g00679 555 CDD B3_DNA 240 294 IPR003340 GO:0003677
Cme04g00679 555 SMART B3_2 18 109 IPR003340 GO:0003677
Cme04g00679 555 SMART B3_2 188 296 IPR003340 GO:0003677
Cme04g00679 555 SMART B3_2 432 528 IPR003340 GO:0003677
Cme04g00679 555 SUPERFAMILY DNA-binding pseudobarrel domain 217 295 IPR015300 -
Cme04g00679 555 Pfam B3 DNA binding domain 432 524 IPR003340 GO:0003677
Cme04g00679 555 Pfam B3 DNA binding domain 240 294 IPR003340 GO:0003677
Cme04g00679 555 Pfam B3 DNA binding domain 23 108 IPR003340 GO:0003677
Cme04g00679 555 MobiDBLite consensus disorder prediction 122 145 - -
Cme04g00679 555 ProSiteProfiles B3 DNA-binding domain profile. 432 528 IPR003340 GO:0003677
Cme04g00679 555 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 325 542 IPR044837 -
Cme04g00679 555 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Cme04g00679 555 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 239 IPR044837 -
Cme04g00679 555 SUPERFAMILY DNA-binding pseudobarrel domain 15 111 IPR015300 -
Cme04g00679 555 CDD B3_DNA 430 524 IPR003340 GO:0003677
Cme04g00679 555 Gene3D - 415 527 IPR015300 -
Cme04g00679 555 CDD B3_DNA 23 107 IPR003340 GO:0003677
Cme04g00679 555 SUPERFAMILY DNA-binding pseudobarrel domain 428 526 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00679 - - - csv:101214902 977.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00679 Cme-Chr4:7383975 Cme11g00256 Cme-Chr11:2843546 9.11E-16 dispersed
Cme04g00679 Cme-Chr4:7383975 Cme08g00528 Cme-Chr8:3295393 2.32E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g838 . Blo12g00937 . Bda03g00232 . Bpe04g00197 Bma04g00184 . . . Cma01g01876 Cma09g00197 Car01g01462 Car12g00479 . Cpe06g00134 Cpe07g00453 . . . . . . . . . . . . . . Cone4ag1546 Cone7ag1405 . . Lsi04g01605 Csa03g04152 Chy04g00568 . . . . . . . . . . Cmo01g01934 Cmo09g00192 Cma12g00508 . . Car09g00166 . Cpe02g00152 Bhi09g02026 . . . . . . Cla05g01994 Cam05g2144 Cec05g2160 Cco05g2207 Clacu05g2135 Cmu05g2008 Cre05g2133 . Csa02g02009 . Cme04g00679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006500 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 0 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41161 PF02362 B3 8.80E-13 CL0405 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00679 Cme_Chr04 FPKM 0.558559 0.0 0.954231 0.541024 9.630944 8.738711 10.712984 0.0 0.694804 0.0