Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00680 ATGCATCTTTCACTATGGAAGCCGTTGTCCCATTGCGCTGCTTTAATCATGGACAAGAAAACAAGAAGACGACATGGGTCTGGAGTAACAGAGAGGCGAAAATCGTCTATTCTCAGGCAATTGCAAGAAAACAAGCTCAGAGAGGCATTGGAAGAAGCTTCTGAAGATGGGTCTCTCGCAAAAACTAGAGACATTGACTGTGAATCGCCAAATCAGGACAGGAATGTTCGACGGTCAAGATCTTTCGCTCGGCTTCATGCTCAAAAGGAGTTTCTACGCGCCACCGCACTCGCCGCGGACCGGACTTATTGCAGGGAGGATTCAATTCCGAATCTCTTTGATGCTTTCACCAAATTCCTCACTATGTACCCAAAATTTCAAACGTCGGAAAAAATCGACCAGTTGAGATCAGAAGAGTATGAACATCTTTCAGAGTCGTTCTCGAAGGTATGTCTTGATTACTGTGGTTTTGGTTTGTTTTCTCACATTCAAACACAACAATTTTGGGAATCTTCTGCGTTCTCTCTCTCTGAAATCACTGCCAATTTGAGCAACCACGCGCTATACGGTGGCGCTGAGAAGGGAACGATTGAACATGATATCAAGACTAGGATTATGGATTATCTGAACATTTCTGAGAATGAATATGGGCTTGTTTTCACAGTCAGTAGAGGATCGGCTTTTAAGCTCTTATCTGAGTCTTACCCTTTTCATACTAATAAGAAATTGCTGACTATGTTTGATCATGAGAGTCAATCTGTGAGTTGGATGGCTCAAAGTGCTAAAGAGAGAGGTGCAAAGGTTTATAGTGCATGGTTTAAGTGGCCAACATTGAGACTCTGTTCAAGGGAGCTCAGGAAACAGATTACAAACAAGAGGAAGAGGAAGAAGGATTCTGTTGCTGGACTCTTTGTATTTCCTGTTCAGTCCAGAGTTACAGGAGCAAAGTATTCTTACCAATGGATGGCGCTTGCCCAGCAGAACAATTGGCATGTATTGCTTGATGCAGGCTCACTTGGTCCTAAGGACATGGATTCATTGGGACTTTCTCTCTTCAGGCCAGATTTTATCATCACCTCGTTTTATCGTGTTTTCGGGTCAGATCCAACTGGGTTTGGCTGCTTGTTGATTAAGAAATCTGTTATAGGGAGCTTGCAAAGCCAATCTGGGCGCACTGGTACAGGAATGGTGAGGATACTTCCCATTTTTCCTCAGTATATTGGTGATTCGATTGATGGTTTGGACGTCTTGGCTGGAATAGAAGATGATGTAATCAATGAGGATTCTGAAACTGAGAAGCATCCGGAGTCACGAATGCCTGCTTTTTCGGGTGTTTTTACACCGAACCAGGTGAGGGATGTGTTTGAGACTGAGATGGAGCATGATAATAATAGCTCGGATAGGGATGGGGCTAGTACCATTTTTGAGGAAGCTGAGAGCATCTCAATTGGTGAGGTTATGAAGAGTCCAATCTTCAGTGAGGACGAGTCGTCAGACAATTCATATTGGATTGATTTGGGTCAGAGTCCCTTTGGTTCTGATAATTCTGACCATCTGATCAAGCAAAAAACATGGTCACCCTTACCACCATCTTGGTTTTCTGGAAAGAGGAACAATAGGAAACGTTCGCCAAAACCAGCATCTAGGTTGTTGAAAAGTCCGATGTGCAGCAATGATAAGCGAGCGAATGCAAGGCACCGTAATGATTCGGTGTTGTCATTTGATGCAGCTCTATTATCAATGTCACAGGATTTCAGCTGTGTGCAGGGGATCCCCGAAGAAGAACAATCTGGAGAGCAAGACTCTTGCTGTGGAAATGTTGGAAGTTTGAGGGATTCTCATGTTGTTAGTGAGATTCAAGAGGATTCAGAAACTGGAGAAGAATCGGCTAGGTTGAGTTTTGCATCAAATGGAATCCATCCTGCAAATCATACTTCTGAGTTTTGGGATCTGAAGCGTTCGAATTCCACAACATCTGGTGCCTTCAATGACCTGAAGGAAAGTGCCATAAGAAGAGAGACAGAGGGGGAATTTAGACTCTTGGGTAGGAGAGAAAGGAGTAGATTTTCTGAACGTGGGTTCTTTGGTTTAGAAGAGGGAGATAGAGCGATAAGCATGGGTCGCCGAGTATCATTTAGAGTAGAATATAATGAAAAAGAAAGTTTGAACGAGATGTTCGAGCTCGGTGAAGCATCGTGTACAGCCTTTGGCAATGAAGAATCAACGAGTGATGGAGAATACGTCGATGAGCAAGAATGGGGAAGGAGGGAGCCTGAAATGATTTGCCGGCATCTTGATCATATCGATATGTTGGGCCTCAACAAGACTACCCTACGTCAAAGGTATCTCATTAACTGGCTTGTCACTTCGCTACTTCAACTCCGATTACCCGGGCAAGATGATGTAGGGGTTCAGCTTGTACAACTGTATGGACCAAAGATCAAGTATGAAAGAGGTGCTGCTATTGCTTTCAATGTAAAAGAGAGCAATGGTAGAGGGCTAATACATCCAGAAGTTGTACAAAAACTAGCCGAAAATAATGGAATAGCTCTTGGAGTTGGCATTCTCAGCCATGTGCGGGCAGTGGACGTCCCGAAGCAGAATTCTGGACAGTATGATCTCGAAGACATGGCATTGTGTAAACCTATGGGTAATGGCCATAACAGGAAGAAACTATTTTTCCGGGTCGAGGTTGTCACAGCGTCCCTTGGATTCCTTACCAACTTTGATGATGTTTATAAAATGTGGGCTTTTGTAGCCAAGTTTCTGAATCCGTCATTTCTTGAAAACAATACTTTGTCTTCCGTCCCTGAGAGTTCGGAATCCTATCACCGGAGCATGTTTTAG 2847 43.73 MHLSLWKPLSHCAALIMDKKTRRRHGSGVTERRKSSILRQLQENKLREALEEASEDGSLAKTRDIDCESPNQDRNVRRSRSFARLHAQKEFLRATALAADRTYCREDSIPNLFDAFTKFLTMYPKFQTSEKIDQLRSEEYEHLSESFSKVCLDYCGFGLFSHIQTQQFWESSAFSLSEITANLSNHALYGGAEKGTIEHDIKTRIMDYLNISENEYGLVFTVSRGSAFKLLSESYPFHTNKKLLTMFDHESQSVSWMAQSAKERGAKVYSAWFKWPTLRLCSRELRKQITNKRKRKKDSVAGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGSDPTGFGCLLIKKSVIGSLQSQSGRTGTGMVRILPIFPQYIGDSIDGLDVLAGIEDDVINEDSETEKHPESRMPAFSGVFTPNQVRDVFETEMEHDNNSSDRDGASTIFEEAESISIGEVMKSPIFSEDESSDNSYWIDLGQSPFGSDNSDHLIKQKTWSPLPPSWFSGKRNNRKRSPKPASRLLKSPMCSNDKRANARHRNDSVLSFDAALLSMSQDFSCVQGIPEEEQSGEQDSCCGNVGSLRDSHVVSEIQEDSETGEESARLSFASNGIHPANHTSEFWDLKRSNSTTSGAFNDLKESAIRRETEGEFRLLGRRERSRFSERGFFGLEEGDRAISMGRRVSFRVEYNEKESLNEMFELGEASCTAFGNEESTSDGEYVDEQEWGRREPEMICRHLDHIDMLGLNKTTLRQRYLINWLVTSLLQLRLPGQDDVGVQLVQLYGPKIKYERGAAIAFNVKESNGRGLIHPEVVQKLAENNGIALGVGILSHVRAVDVPKQNSGQYDLEDMALCKPMGNGHNRKKLFFRVEVVTASLGFLTNFDDVYKMWAFVAKFLNPSFLENNTLSSVPESSESYHRSMF 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7394717 7397563 - MELO3C018248.2.1 Cme04g00680 324941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00680 948 PANTHER OS03G0765800 PROTEIN 32 941 - -
Cme04g00680 948 Gene3D - 172 407 IPR015421 GO:0003824
Cme04g00680 948 SUPERFAMILY PLP-dependent transferases 151 394 IPR015424 -
Cme04g00680 948 MobiDBLite consensus disorder prediction 52 74 - -
Cme04g00680 948 Gene3D Aspartate Aminotransferase, domain 1 757 930 IPR015422 GO:0003824
Cme04g00680 948 MobiDBLite consensus disorder prediction 530 564 - -
Cme04g00680 948 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 32 941 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00680 - - - csv:101215138 1827.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00680 Cme-Chr4:7394717 Cme11g00248 Cme-Chr11:2803727 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g837 . Blo12g00938 Bda01g00558 Bda03g00231 Bpe02g00415 Bpe04g00196 Bma04g00183 Bma01g02291 . . Cma01g01875 Cma09g00198 Car01g01461 . . Cpe06g00135 . . . . . . . . . . . . . . . Cone4ag1547 Cone7ag1404 . . Lsi04g01604 Csa03g04151 Chy04g00569 . . . . . . . . . . Cmo01g01933 Cmo09g00193 . . . Car09g00167 . Cpe02g00153 Bhi09g02024 . . . . Mch11g0244 . Cla05g01995 Cam05g2146 Cec05g2161 Cco05g2209 Clacu05g2137 Cmu05g2009 Cre05g2134 . . . Cme04g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005433 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00680 Cme_Chr04 FPKM 0.0 0.0 0.0 1.124967 8.537804 3.049658 6.837883 0.0 0.0 0.0