Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00708 ATGAAGTTTGTTTCCATGTCTATGGTTCTGTCTTTGGTCTTGTTCATGTGTATTGGATCTTACGCCTCTTTCACTCCCATTGATAACTATTTGATATCGTGTGGTTCTACACAAAACATCACCTTCCAAGGTAGAACGTTTGTTCCTGATTCTGGACATTCATTGCTCTCCAATGATGGTGAAAGCTCTGTTGTTAATTCAAAAGGTACGACTGCTCCATCTCCAATCTATCAATCTGCTCGGGTTTTCACGAGCATTGCTTCTTACAAATTCGAAATCAAGAAAGAAGGTCGACATTGGGTTCGGTTGTATTTTTATCCCATCTCAAAGTCAGAGCGGAATCTTGCATCTGCATCAATTACTGTTGTTACTGAGAAGTTTGTGCTGTTGAACAACTTCACTTTCAAGAACTACAATGGTTCTTTTTTGTTCAAGGAGTATGCAATCAATGTCACTTCAGATTCCTTGACCCTTACTTTCATTCCGTCCAATGGTTCTGTTTCGTTTGTTAATGCGATTGAAGTTGTCTCCGTGCCTGATGAGCTGATACCTGACCAAGCATTGGCTTTGAATCCATCTGCTCCTTTCAGTGGCATCTCAGAACTTGCTTTTGAAACTGTTTACCGGCTGAATATGGGGGGTCCTTTACTCACTTCGCAAAATGATACGCTTGGAAGGACTTGGGAGAATGATATGAAATACCTCCATGTCAACAGTTCTGCAGTGAATGTCTCTGCCAGCCCGGGGAGCATAAAATATCATGCCGGTGTGACTCCAGAAACTGCACCAAATTGGGTTTATGCAACTGCAGATGCCATGGGAGACCCAAATGTACCAAACGTGAACTTCAACTTGACTTGGGTTTTCTCTGTTGAGCCAAGTTTTCAATACTTTGTCAGAGTGCACTTTTGTGATATTATGAGCAAGGCTCTCAATAATCTGGTTTTCAATCTTTACATCAATTCTGATAATGCTCTGGGAAGCTTTGATCTATCGTCTTTAACAGGTGACTTGGGTGTGCCTTATTACAAAGACTTCATTTCCAACTCTGCAGATTCATCTACTTTGACTGTTAGTGTTGGTCCAGATACAATGGCAGACATCACCAATGCAACCATGAATGGGTTGGAGATTATGAAGATAAGCAACCAAGCTGGGAGCTTGGATGGAACGTCATCTGTTGAAAGCCTGTTCCCAGATGCGCCTTCAAAGAAAAACAACATAGCAATCATTGTTGGTTCTGTCTTGGGAGCTGTAGTAGGACTTGCTTTGATCGTCTTGTGCTATTGCTGTTTCGTAGGACGCAAGTCAAAGACTACTCAACCAGCACACCCTTGGCTGCCTTTGCCCTTATATGGGAACTCTCAAACCATTACAAAAGTATCAACAACTTCTCAAAAGAGTGGAACTGCAAGCTTTATTTCTTTGGCTTCTTCCAGTCTCGGAAGATTCTTCACATTTCAGGAAATTCTTGATGCTACCAACAAATTTGATGAAAATCTGCTCCTTGGAGTTGGTGGTTTTGGTAGGGTTTACAAGGGAACACTTGAAGATGGTATGAAAGTTGCTGTTAAAAGAGGTAACCCAAGATCAGAACAAGGTCTTGCCGAATTTCGAACTGAAATAGAAATGTTATCAAAGCTACGACATCGTCATCTAGTGTCTCTTATTGGCTACTGTGATGAAAGATCAGAAATGATTCTTGTCTACGAGTATATGGCAAATGGACCTCTCAGGAGTCACTTGTATGGAACAGATCTACCACCTTTGTCATGGAAGCAACGACTTGATATTTGCATTGGTGCTGCAAGGGGGCTTCATTATCTTCACACTGGTGCAGCTCAAAGCATAATACACCGAGATGTTAAAACCACAAACATTCTCTTGGATGAGAATTTCGTTGCCAAAGTTGCAGACTTTGGTCTCTCAAAAACCGGGCCATCTCTGGATCAGACTCATGTAAGTACTGCTGTCAAGGGTAGTTTTGGTTACCTTGATCCTGAATACTTCAGGCGACAACAGCTCACTGAGAAGTCAGATGTATATTCATTCGGAGTCGTGCTAATGGAAGTTCTCTGCACGAGGCCAGCGCTAAACCCGGTTCTGCCCCGAGAACAAGTCAACATAGCTGAATGGGCAATGACCTGGCAGAAGAAGGGCATGCTAGATCATATTATGGACCCAAATCTGGTTGGTAAAGTTAATCCAGCGTCGCTTAAGAAGTTTGGTGAAACAGCTGAGAAGTGTCTGGCTGAGTATGGGGTTGACAGGCCATCCATGGGAGACGTCCTGTGGAACCTGGAATATGCTCTTCAACTCGAGGAAACTTCATCTGCTCTAATGGAACCTGAAGACAACAGCACAAATCACATCCCTACCATCCAACTGACCCCACTTGAGCCATTTGATAATAGTGTAAGCATGATTGACGGAGGGAACTCTGGCACCGACGATGATGCAGAAGATGCTGCAACAAGTGCAGTATTTTCACAGCTTGTAAATCCTCGCGGGAGATGA 2517 42.99 MKFVSMSMVLSLVLFMCIGSYASFTPIDNYLISCGSTQNITFQGRTFVPDSGHSLLSNDGESSVVNSKGTTAPSPIYQSARVFTSIASYKFEIKKEGRHWVRLYFYPISKSERNLASASITVVTEKFVLLNNFTFKNYNGSFLFKEYAINVTSDSLTLTFIPSNGSVSFVNAIEVVSVPDELIPDQALALNPSAPFSGISELAFETVYRLNMGGPLLTSQNDTLGRTWENDMKYLHVNSSAVNVSASPGSIKYHAGVTPETAPNWVYATADAMGDPNVPNVNFNLTWVFSVEPSFQYFVRVHFCDIMSKALNNLVFNLYINSDNALGSFDLSSLTGDLGVPYYKDFISNSADSSTLTVSVGPDTMADITNATMNGLEIMKISNQAGSLDGTSSVESLFPDAPSKKNNIAIIVGSVLGAVVGLALIVLCYCCFVGRKSKTTQPAHPWLPLPLYGNSQTITKVSTTSQKSGTASFISLASSSLGRFFTFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGMKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDHIMDPNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSGTDDDAEDAATSAVFSQLVNPRGR 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8164056 8166572 + MELO3C018211.2.1 Cme04g00708 324969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00708 838 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00708 838 MobiDBLite consensus disorder prediction 802 823 - -
Cme04g00708 838 Pfam Malectin-like domain 32 381 IPR024788 -
Cme04g00708 838 Gene3D - 202 383 - -
Cme04g00708 838 Gene3D - 29 178 - -
Cme04g00708 838 Gene3D Phosphorylase Kinase; domain 1 455 572 - -
Cme04g00708 838 Gene3D Transferase(Phosphotransferase) domain 1 573 790 - -
Cme04g00708 838 Pfam Protein tyrosine and serine/threonine kinase 502 695 IPR001245 GO:0004672|GO:0006468
Cme04g00708 838 SMART serkin_6 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00708 838 PANTHER OS07G0166700 PROTEIN 16 831 IPR045272 GO:0004714|GO:0006468
Cme04g00708 838 SUPERFAMILY Protein kinase-like (PK-like) 474 768 IPR011009 -
Cme04g00708 838 CDD STKc_IRAK 503 768 - -
Cme04g00708 838 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 16 831 - -
Cme04g00708 838 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Cme04g00708 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01864 Cme-Chr2:25266955 Cme04g00708 Cme-Chr4:8164056 0 dispersed
Cme04g00708 Cme-Chr4:8164056 Cme11g01730 Cme-Chr11:25460130 0 dispersed
Cme08g00966 Cme-Chr8:6347761 Cme04g00708 Cme-Chr4:8164056 2.16E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64797 PF12819 Malectin_like 3.50E-39 CL0202 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00708 - - csv:101215627 1613.97