Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00755 ATGGCAAATGCTTCTCTAACTCTGTTTCTGTTTCTGTCTCTGTTTCTCTTCTCTTCACCGTCTACGGCTGTTGATTTCATAACTTCCTCACAGAACCTTACCCATGGCGATACTCTCGTCTCAGCAAAAGGGTTTTTCGAATTGGGTTTCTTTACCCCAGGGAATTCCACCAACCGCTACTTGGGAATTTGGTACAAAATCATCCCAGTTCGTACAATTGTTTGGGTCGCCAACAGAGAAAACCCCATCAGAAATTCTTCTGCCGTTGCTGTTCTCAAAATCAACTCTACCTCCAGCGATCTCTTCCTTTTCGAGAATGATGTTGTTGTTTGGTCTGGAAAATCGTTGAAACCAGCCAAAAGTCCCAAGCTACAGCTCTTAGACGATGGAAATCTGGTGTTGAAAGACGCTGAATCGGAGGAAACTTCATGGCAAAGCTTTGATTACCCAACCGATACATTACTCCCCGGAATGAAACTTGGATGGGACTTCAAAAACGGAATCCAACGGCGATTATCCGCTTGGAAAACCTCCGATGACCCATCTCCAGGGAGTTTAACGATGGAAATGATGAACACCAGCTACCCAGAACCAGCGATGTGGAATGGGTCGAACGAGTACATGAGAAGCGGACCATGGAACGGTCTTCAATTCAGCGCAAAACCCACATCGGCGTTACCGATTTTAGTTTACAGCTATGTAAACAACAAATCCGAGCTGAGTTACAGCTACGAGCTCATAAACTCTTCGTTAATCGGAAGAATGGTGTTGAATCAAACGAAATTCAGAAGAGAAGCTTTGTTATGGTCTGAATCTGAGAAGAATTGGAAGTTGTATGCGACTATGCCGAGGGATTACTGCGATACATATGGTCTTTGTGGTGCGTTTGGGAGCTGTGACATTGAGCAAGTTCCTGCTTGTCGATGTCTATTCGGGTTTCATCCTAAAGTACAAGAGAAATGGAATTTGATGGATTATACCGAAGGGTGTGTGAGGAATAAGCCTTTGAATTGTTCTGATAAAACTGGGTTTGCAAAGTTGCCAGGGTTGAAATTGCCTGATACAAAACAATCTTGGGTTAATGAAAGTATGAGTTTGAATGAATGTAAAGAAAAGTGTTTGAGGGATTGTTCTTGTGTGGCTTTTGCTAATACCGATATTAGAGGATCTGGGAATGGTTGTGCTATTTGGTTTGGGGAACTTGTTGATATCAAAGTTGTTCGAAAAGGAGGCCAAGATTTGTATGTTAGAATGCTGGCTTCTGAATTGGAGACAAAGAAGACGAGTTCAGCTGTCGTGGGTATTATCGTCGGAGCAGCCGCTCTAGTGATTCTGGGTTTAGTTTTGATTGGGTTTTACGTGATCAGAAGCAAAAGAAGAAACCTCCAAGTTGCAGGAAAGGATCTTGAAGGGCAAGAAGACGATTTGGAGCTTCCATTATTCGACTTAGCTACAATATCTAATGCCACTGACAATTTTTCAAACTCCAACAAGCTTGGAGAAGGTGGCTTTGGTGCAGTCTTTAGGGGTAGACTTAAAGATGGACAAGAAATTGCAGTTAAGAGGCTTTCAAGCTATTCAAGACAAGGGACTGATGAATTCAAGAATGAAGTGATACTCATTGCCAAACTTCAACATAGAAATCTTGTAAAACTTTTGGGTTGTTGCATACAAGGAGACGAAAAGATGTTGATTTATGAGTACATGCCTAATAAGAGTTTGGACTCCTTCATTTTTGACTCTGCTAGAAAGAAGCTTTTAGATTGGTCGAAACGATTCAATATCATATGCGGAGTAGCTCGAGGTATTCTTTACCTTCATCAAGATTCAAGATTGAGGATTATACATCGGGATTTAAAAGCAAGCAATGTCTTGCTTGATATTGACCTAAATCCAAAAATCTCGGATTTTGGAATGGCTAGAACGTTTGGAGGGGATCAAACCGAAGGAAATACTCGGAGAGTGGTTGGAACATATGGGTATATGGCACCAGAATACGCTATAGATGGACAATTTTCCATTAAGTCGGACGTCTTTAGTTTTGGAATTCTAATGTTGGAAATCATAAGTGGAGAGAAGAATAGAGGATTTTTCCGTCCTAACCACGCTCTCAACCTGATTGGACATGCATGGAAATTATGGAATGAAGGAAAACCATTAGAGTTGATTGATGCAAGCATTGGAGAATCATATGCTTTATCAGAAGTGCTGAGATGCATACATCAACTACCTGAGGATCGGCCAACCATGTCAAATGTAGTTTTAATGCTAAGTAGTGAGAGCTCATTGGCACAGCCAAAACAACCAGGTTTCTACATGGAAAGAGATTCTCTTGAAGTATTTTCTGTTTCTGGCAAGAATGAATCTTCTACTACAAATGAATTAACTATTACGCTCTTGGAGGCTAGATAA 2412 41.17 MANASLTLFLFLSLFLFSSPSTAVDFITSSQNLTHGDTLVSAKGFFELGFFTPGNSTNRYLGIWYKIIPVRTIVWVANRENPIRNSSAVAVLKINSTSSDLFLFENDVVVWSGKSLKPAKSPKLQLLDDGNLVLKDAESEETSWQSFDYPTDTLLPGMKLGWDFKNGIQRRLSAWKTSDDPSPGSLTMEMMNTSYPEPAMWNGSNEYMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELSYSYELINSSLIGRMVLNQTKFRREALLWSESEKNWKLYATMPRDYCDTYGLCGAFGSCDIEQVPACRCLFGFHPKVQEKWNLMDYTEGCVRNKPLNCSDKTGFAKLPGLKLPDTKQSWVNESMSLNECKEKCLRDCSCVAFANTDIRGSGNGCAIWFGELVDIKVVRKGGQDLYVRMLASELETKKTSSAVVGIIVGAAALVILGLVLIGFYVIRSKRRNLQVAGKDLEGQEDDLELPLFDLATISNATDNFSNSNKLGEGGFGAVFRGRLKDGQEIAVKRLSSYSRQGTDEFKNEVILIAKLQHRNLVKLLGCCIQGDEKMLIYEYMPNKSLDSFIFDSARKKLLDWSKRFNIICGVARGILYLHQDSRLRIIHRDLKASNVLLDIDLNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILMLEIISGEKNRGFFRPNHALNLIGHAWKLWNEGKPLELIDASIGESYALSEVLRCIHQLPEDRPTMSNVVLMLSSESSLAQPKQPGFYMERDSLEVFSVSGKNESSTTNELTITLLEAR 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8964045 8968192 + MELO3C018168.2.1 Cme04g00755 325016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00755 803 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Cme04g00755 803 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 800 - -
Cme04g00755 803 Pfam Protein tyrosine and serine/threonine kinase 496 755 IPR001245 GO:0004672|GO:0006468
Cme04g00755 803 SMART blect_4 30 150 IPR001480 -
Cme04g00755 803 Gene3D Hepatocyte Growth Factor 335 420 - -
Cme04g00755 803 Pfam Domain of unknown function (DUF3403) 758 803 IPR021820 GO:0004674
Cme04g00755 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Cme04g00755 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Cme04g00755 803 ProSiteProfiles Protein kinase domain profile. 493 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00755 803 ProSitePatterns Protein kinases ATP-binding region signature. 499 521 IPR017441 GO:0005524
Cme04g00755 803 SMART serkin_6 493 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00755 803 PIRSF SRK 1 803 IPR024171 GO:0004674
Cme04g00755 803 CDD B_lectin 33 150 IPR001480 -
Cme04g00755 803 Pfam S-locus glycoprotein domain 209 316 IPR000858 GO:0048544
Cme04g00755 803 SUPERFAMILY Protein kinase-like (PK-like) 478 757 IPR011009 -
Cme04g00755 803 Gene3D - 20 147 IPR036426 -
Cme04g00755 803 CDD PAN_AP_plant 335 417 - -
Cme04g00755 803 Gene3D Phosphorylase Kinase; domain 1 457 568 - -
Cme04g00755 803 Pfam PAN-like domain 338 404 IPR003609 -
Cme04g00755 803 Gene3D Transferase(Phosphotransferase) domain 1 569 771 - -
Cme04g00755 803 ProSiteProfiles PAN/Apple domain profile. 338 419 IPR003609 -
Cme04g00755 803 CDD STKc_IRAK 499 757 - -
Cme04g00755 803 SMART ntp_6 339 418 IPR003609 -
Cme04g00755 803 PANTHER - 23 800 - -
Cme04g00755 803 Pfam D-mannose binding lectin 72 176 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00378 Cme-Chr1:2753155 Cme04g00755 Cme-Chr4:8964045 2.82E-165 dispersed
Cme04g00755 Cme-Chr4:8964045 Cme06g02050 Cme-Chr6:25849332 0 dispersed
Cme06g02051 Cme-Chr6:25854463 Cme04g00755 Cme-Chr4:8964045 2.88E-164 dispersed
Cme06g02052 Cme-Chr6:25862630 Cme04g00755 Cme-Chr4:8964045 8.22E-145 dispersed
Cme04g00755 Cme-Chr4:8964045 Cme12g01425 Cme-Chr12:22035451 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64798 PF07714 PK_Tyr_Ser-Thr 1.60E-50 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00755 - - csv:101216184 1493.4