Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00774 ATGAAACGAGGATACTCAGAATCCCCATCGGCATCTCTGGGGCCTCCACAATCCAGATTCAAGTACAACCCAGAAGGTGATGCTGAGTTCTTAGAAGATGAAAGCACCAAGATTTTTGCTCGGAAAGTCGCTGAACATTACAGTGCTAGGACGAATCAAACTTTGGAAGAGCGAGAAGCTAGTGTTATCATCCATTTAAAGAAACTTAACAATTGGATTAAAAGTGTCTTGGTTCAGCTTTATGCTCGCCGAGGGGATGCTGTTCTTGATCTTGCCTGCGGGAAGGGTGGTGATCTTATCAAATGGGATAAGGCCAGAATTGGATATTATGTTGGCATCGATATAGCCGAAGGATCAATAGAAGATTGCCGTACTCGTTACAATGGTGACGCCGACCATCATCAGCGTCGTAAAAAGTTTTCATTTCCAGCCCGCCTAATATGTGGAGATTGTTATGAGGCAAGGCTGGATCATGTCTTAGCAGATGATGCTCCATTCGACATTTGCAGTTGCCAGTTTGCATTGCATTATTCTTGGTCTACTGAGGCTCGTGCACGACGTGCCTTAGCCAATATATCAGCTCTTCTCCGCCCAGGAGGTATTCTCATTGGAACCATGCCAGATGCTAATGTGATTGTCAAAAAGCTTAGAGAAGCTCAAGGCTTGATGTTTGGAAATAGCGTCTATTGGATACGCTTTGATGAAGAATATGCTGAAAAGAAATTTAGTGCTTCCAGCCCCTTTGGTATAAAGTACTTGTTTCATCTAGAGGATGCTGTTGATTGCCCCGAGTGGATTGTCCCGTTTCATGTTTTCAAATCATTGGCTGAAGAGTATGACTTAGAGTTGGTTTTTGTCAAGAACTCGCATGAATTTGTGCACGAGTACTTGAAAAAACCAGAATTCGTGGATCTAATGCGACGACTTGGTGCCTTGGGTGATGGCAACCAAGATCAAAGTACATTATCTCCGGACGAGTGGGAAGTGGCGTATCTGTACCTTTCGTTTGTTTTGAGAAAGCGAGGCCAACCCGACAGGACACAGGCACCAAATAGAAGAGACAGGGGGCAAATGCAAATAGGAAAGGAGGACATAATGTACATTTCAACTGATTAA 1116 43.91 MKRGYSESPSASLGPPQSRFKYNPEGDAEFLEDESTKIFARKVAEHYSARTNQTLEEREASVIIHLKKLNNWIKSVLVQLYARRGDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEARLDHVLADDAPFDICSCQFALHYSWSTEARARRALANISALLRPGGILIGTMPDANVIVKKLREAQGLMFGNSVYWIRFDEEYAEKKFSASSPFGIKYLFHLEDAVDCPEWIVPFHVFKSLAEEYDLELVFVKNSHEFVHEYLKKPEFVDLMRRLGALGDGNQDQSTLSPDEWEVAYLYLSFVLRKRGQPDRTQAPNRRDRGQMQIGKEDIMYISTD 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9400564 9413723 - MELO3C018155.2.1 Cme04g00774 325035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00774 371 MobiDBLite consensus disorder prediction 1 24 - -
Cme04g00774 371 CDD AdoMet_MTases 88 203 - -
Cme04g00774 371 PANTHER MRNA CAP GUANINE-N7 METHYLTRANSFERASE 1 367 - -
Cme04g00774 371 Pfam mRNA capping enzyme 33 341 IPR004971 -
Cme04g00774 371 ProSiteProfiles mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56) domain profile. 22 347 IPR004971 -
Cme04g00774 371 PIRSF ABD1 9 343 IPR016899 GO:0004482|GO:0006370
Cme04g00774 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 70 340 IPR029063 -
Cme04g00774 371 Gene3D Vaccinia Virus protein VP39 59 342 IPR029063 -
Cme04g00774 371 PANTHER MRNA GUANINE-7- METHYLTRANSFERASE 1 367 IPR039753 GO:0004482
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00774 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] - csv:101217782 744.577
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g391 . . . . . . . . . . Cma01g01165 . . . . . Cpe02g00737 Bhi09g01965 Tan01g4483 . . Hepe01g1328 . . . . . . . . . . Cone9ag0116 . . Lsi04g01258 . Chy04g01032 . . . . . Bpe11g00516 . . Bma14g00368 . Cmo01g01220 . . . . Car16g00578 . . . . . . . . . Cla05g01557 Cam05g1664 Cec05g1669 Cco05g1709 Clacu05g1659 Cmu05g1552 Cre05g1664 . . . Cme04g00774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004967 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00774 Cme_Chr04 FPKM 13.882032 15.884625 37.211479 36.812508 9.700222 7.460461 8.744931 14.827359 15.227242 13.158319