Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00799 ATGACATTTCGACAACTTATGGGTGTTGCAAAAAGGAGATGTTTGGTTGTTCTGGTGATTCTCATCTGTGCTTCTTTAGCGACTTGCTTGAAGAACCACGAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTAGTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTGGTTAAGTGCAACTTGGATTTGTTTCAGTTAAGGGAAGCTGCCGATGGTATTGACCTCTGTTTCGAAGAAACACCCAGAAGCACAAACGGAATTAACTTTGAATGTCGGATGCTGACAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAGACTCTTTTAGATTGTTTAAGAAAAAAAATTCATGTCTCTGGAAAAGACTACAGCTCTGAAACTTGGTACACCAGGTATTTGGAGTCGGTGTTTTTAATTCCTGGTAGTCTTAGAAGGAAGTTAAGTTCTAGATTGCTTCGAAATGCTAAAGAAGGCACTGCTCCCGCACCTGAATCTTCAGCTGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAGAAAGAAAAGAAATCTAATAATAATCAAACAGTCATCATCGCTGTTGTTGTAACAGCAACGGTGACTTTTATTATTGTAGCTCTGCTATTTTTGTGCTATAACAAGAGTGGCTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAATCATGAACTTTCAGGTTCTTCCCCCAAATATTCTGCTTTTGGGGATTCTCTTAAGGATGACAAGCTCATGAATCAATCGTCTAGCTTAAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAGCCTGCACATTGTCTCTGACGGTGGGCGTACTTCAATGCAGGGACCTCCATCTTTTGGAGCTGCTGGAATTGCCAATAGTTCATCTTTTGGATCAACGAATATGGCTGGCAGTAGTAATGGTTTGGTGCCACCTCCTCCAGGAGCAGTGCCAGTCACCTCAGAAATTTTACCTCCTCTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACGCCCTTCGTCTTTTAAGCCCCCATCCAGCATGGCTAGTCCTCCTCCTCCTCCACCACCTCCTGCACCACCACCACCAAGACCACCGGGAAATTCAGTTCGCCCTCCAGGACCTCCTCCACCTCCACCACCTATACCAGGCAAGGCAGGCCCTCGCCCACCACCACCTCCCAGAAGTGGTATTGCTCCTCCTCGGCCACCTCCATTAGCACACAAAGGTGCAAATCCACCTCGACCTCCCAAGCCTTTTGGTTTAGGTGATGATGAAATGGACGAATCAGGTGTTCCCAAAGCCAAATTAAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGATATACGCCTGTAGATAAAACCAAAACTGAGGGTAAGAAGGAGTCATCATCACAAGATCCTGGACATCAGTACATTCAGATTATTGATTCAAAGAAAGCGCAAAATCTGTCCATTCTTCTGCGAGCGCTAAATGTGACAAAAGAAGAAGTCTGTGATGCGCTTCATGAAGGAACTGAACTTCCTTCCGAACTTCTAGAGAACTTGCTGCGGATGGCACCAACTCCAGAAGAAGAACTCAAACTTAGACTTTTTAGCGGGGAACTTTCTCAACTTGGAAATGCTGAGCGTTTTCTTAAATGTTTGGTTGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATTGGCACTCTTCAGGAGGACATCACCATCACTAAAGACTCCTTCGTTAACTTGGAGGTTGCTTGTAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTTAAGACGGGCAATCGAATGAACGATGGAACTTTTCGTGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCGGATGTGAAAGGAAAAGATGGCAAGACTACATTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGGATAAGAGCTGCTCGGAATGGCACAGGAAGTCAGAGCTTCTCAAGCACCTCATCAAAGGATTTGCTGGATGATACTACTGACACCGAAGAGCATTACCGTGCCTTGGGTCTTCAGGTTGTCTCAGGGTTGAGTGGTGAACTTCAGAATGTGAAGAAAGCAGCAACGATAGATGCTGATGCCTTGACTGGAACTGTTTCGAAACTTGGGCATGGACTCTTAAAGACAAGAGACTTTCTGAATAAAGACCTGCGGGGTCTAGCTGAAGAGAGTCAATTTCACGAAACACTGAAAGTCTTTGTGCAGAATGCGGAGGCTGATATCATGGCCCTCCTGGAAGAAGAAAAAAGAATCATGGAATTGGTGAAAAGCACAGGCGACTACTTCCATGGAAATGCAGGAAAAGACGAGGGCTTACGATTGTTTGTAATTGTGAGAGATTTCTTGATAATGATAGATAAGACATGCCGAGAAATAAAGGAGGCACAGAAAAAGCATGCAAAGGGACACAGAAAGGCAGTGTCATCTTCTGATATCCACCCGCCTTCGTCTTCGTTATCTACTGATATCAATCACCACCCTCCGTCGTCTACCAATATCAATCAACCCCCGTCATCTACCGATATCAGTCAACCCCTATCAACTACAGTTTCTGATCTACGACACCCTCCTTCTCCTGATTTGAATCAGCTGATTTTTCCTGCAATCACTGATCGTCGGATGGGTAACTCAAGTTCAGATGATGAGGAGAGTCCGTAG 2871 44.76 MTFRQLMGVAKRRCLVVLVILICASLATCLKNHEEEELILSQLADPISGDVNTEMAELLLVKCNLDLFQLREAADGIDLCFEETPRSTNGINFECRMLTKEKTNRMLRAMHPQMKQTLLDCLRKKIHVSGKDYSSETWYTRYLESVFLIPGSLRRKLSSRLLRNAKEGTAPAPESSADEKPSRKASSTSGQKEKKSNNNQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLNHELSGSSPKYSAFGDSLKDDKLMNQSSSLSHHQRAPSLDGSLHIVSDGGRTSMQGPPSFGAAGIANSSSFGSTNMAGSSNGLVPPPPGAVPVTSEILPPLKPPPGRAVPLPPERPSSFKPPSSMASPPPPPPPPAPPPPRPPGNSVRPPGPPPPPPPIPGKAGPRPPPPPRSGIAPPRPPPLAHKGANPPRPPKPFGLGDDEMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPGHQYIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKCLVDIPFAFKRLESLLFIGTLQEDITITKDSFVNLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAARNGTGSQSFSSTSSKDLLDDTTDTEEHYRALGLQVVSGLSGELQNVKKAATIDADALTGTVSKLGHGLLKTRDFLNKDLRGLAEESQFHETLKVFVQNAEADIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKTCREIKEAQKKHAKGHRKAVSSSDIHPPSSSLSTDINHHPPSSTNINQPPSSTDISQPLSTTVSDLRHPPSPDLNQLIFPAITDRRMGNSSSDDEESP 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9745980 9752903 - MELO3C018134.2.1 Cme04g00799 325060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00799 956 Coils Coil 805 825 - -
Cme04g00799 956 PANTHER FORMIN-RELATED 386 953 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cme04g00799 956 PANTHER FORMIN-RELATED 11 136 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cme04g00799 956 PANTHER FORMIN-RELATED 166 391 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cme04g00799 956 SMART it6_source 451 871 IPR015425 -
Cme04g00799 956 MobiDBLite consensus disorder prediction 881 927 - -
Cme04g00799 956 MobiDBLite consensus disorder prediction 867 956 - -
Cme04g00799 956 MobiDBLite consensus disorder prediction 272 455 - -
Cme04g00799 956 PANTHER FORMIN-LIKE PROTEIN 3 386 953 - -
Cme04g00799 956 ProSiteProfiles Formin homology-2 (FH2) domain profile. 451 882 IPR015425 -
Cme04g00799 956 PRINTS Proline rich extensin signature 357 369 - -
Cme04g00799 956 PRINTS Proline rich extensin signature 369 390 - -
Cme04g00799 956 PRINTS Proline rich extensin signature 332 348 - -
Cme04g00799 956 PRINTS Proline rich extensin signature 401 417 - -
Cme04g00799 956 Gene3D Formin, FH2 domain 456 883 IPR042201 -
Cme04g00799 956 Pfam Formin Homology 2 Domain 457 855 IPR015425 -
Cme04g00799 956 MobiDBLite consensus disorder prediction 164 196 - -
Cme04g00799 956 SUPERFAMILY Formin homology 2 domain (FH2 domain) 400 874 - -
Cme04g00799 956 MobiDBLite consensus disorder prediction 309 328 - -
Cme04g00799 956 MobiDBLite consensus disorder prediction 332 444 - -
Cme04g00799 956 PANTHER FORMIN-LIKE PROTEIN 3 11 136 - -
Cme04g00799 956 PANTHER FORMIN-LIKE PROTEIN 3 166 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00799 - - - cmo:103494960 1013.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00799 Cme-Chr4:9745980 Cme11g00355 Cme-Chr11:3644288 2.62E-121 dispersed
Cme04g00799 Cme-Chr4:9745980 Cme12g01971 Cme-Chr12:25543931 5.33E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g414 Blo03g00585 Blo03g01433 Bda07g00336 Bda09g00382 . Bpe08g01143 . . . . Cma01g01155 Cma09g00921 . Car09g00837 . Cpe06g00740 Cpe02g00746 Bhi09g01953 . . . Hepe01g1315 . . . . . . . . . . Cone9ag0106 . . Lsi04g01249 . Chy04g01020 . . . . . Bpe11g00522 . Bma07g01317 Bma14g00359 . Cmo01g01208 Cmo09g00918 . . . Car16g00567 . . . . . . . . . Cla05g01545 Cam05g1653 Cec05g1657 Cco05g1695 Clacu05g1644 Cmu05g1539 Cre05g1650 . . . Cme04g00799
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g01384 . 220 696 FH2 protein (formin) Gene Family AT3G25500 65.2 5.9e-161 565.5
Cme11g00355 . 475 894 FH2 protein (formin) Gene Family AT3G25500 63.0 4.0e-141 499.6
Cme02g00090 . 500 893 FH2 protein (formin) Gene Family AT3G25500 51.7 4.7e-102 369.8
Cme11g00355 . 475 910 FH2 protein (formin) Gene Family AT2G43800 55.4 8.9e-126 448.4
Cme04g00799 . 445 591 FH2 protein (formin) Gene Family AT4G15200 65.5 1.2e-46 184.5
Cme11g00755 . 334 599 FH2 protein (formin) Gene Family AT4G15200 54.4 1.3e-38 157.9
Cme04g00799 . 7 953 FH2 protein (formin) Gene Family AT5G54650 50.2 4.1e-171 599.0
Cme11g00355 . 35 913 FH2 protein (formin) Gene Family AT5G67470 56.5 8.1e-228 787.3
Cme10g01384 . 258 678 FH2 protein (formin) Gene Family AT5G67470 62.3 1.4e-126 451.1
Cme02g00090 . 500 895 FH2 protein (formin) Gene Family AT5G67470 50.7 3.0e-105 380.2
Cme10g00485 . 403 890 FH2 protein (formin) Gene Family AT1G59910 52.5 6.8e-129 458.8
Cme11g00355 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.3 6.9e-90 328.9
Cme04g00799 . 451 864 FH2 protein (formin) Gene Family AT3G05470 51.2 2.0e-106 384.0
Cme11g00355 . 472 870 FH2 protein (formin) Gene Family AT3G05470 51.8 5.9e-106 382.5
Cme04g01449 . 893 1204 FH2 protein (formin) Gene Family AT1G42980 50.5 1.7e-68 256.5
Cme04g01449 . 1 1211 FH2 protein (formin) Gene Family AT1G31810 66.8 0.0e+00 1245.7
Cme07g00118 . 1 428 FH2 protein (formin) Gene Family AT1G31810 52.3 2.3e-132 470.7
Cme02g01861 CCT 1014 1335 FH2 protein (formin) Gene Family AT5G07650 75.2 4.0e-130 462.6
Cme12g01971 CCT 980 1290 FH2 protein (formin) Gene Family AT5G07650 69.5 1.6e-118 424.1
Cme02g01069 . 867 1186 FH2 protein (formin) Gene Family AT5G07650 62.0 1.9e-108 390.6
Cme04g01449 . 877 1208 FH2 protein (formin) Gene Family AT5G07650 58.4 1.2e-105 381.3
Cme02g01861 CCT 941 1328 FH2 protein (formin) Gene Family AT5G07770 69.4 3.8e-141 498.8
Cme12g01971 CCT 903 1290 FH2 protein (formin) Gene Family AT5G07770 62.7 1.8e-127 453.4
Cme02g01069 . 790 1178 FH2 protein (formin) Gene Family AT5G07770 56.7 2.7e-115 412.9
Cme04g01449 . 813 1202 FH2 protein (formin) Gene Family AT5G07770 54.7 2.0e-113 406.8
Cme02g01069 . 797 1187 FH2 protein (formin) Gene Family AT3G32400 68.4 6.6e-147 517.7
Cme02g01861 CCT 941 1335 FH2 protein (formin) Gene Family AT3G32400 65.7 1.3e-142 503.4
Cme04g01449 . 813 1207 FH2 protein (formin) Gene Family AT3G32400 65.7 2.7e-140 495.7
Cme12g01971 CCT 873 1293 FH2 protein (formin) Gene Family AT3G32400 57.6 2.3e-131 466.1
Cme07g00118 . 1 575 FH2 protein (formin) Gene Family AT2G25050 58.6 1.3e-190 664.1
Cme02g01861 CCT 942 1335 FH2 protein (formin) Gene Family AT5G07780 63.3 4.3e-124 441.8
Cme12g01971 CCT 904 1293 FH2 protein (formin) Gene Family AT5G07780 56.9 8.5e-112 401.0
Cme04g01449 . 814 1203 FH2 protein (formin) Gene Family AT5G07780 51.7 3.3e-100 362.5
Cme02g01069 . 797 1178 FH2 protein (formin) Gene Family AT5G07780 53.3 4.4e-100 362.1
Cme02g01861 CCT 1 1344 FH2 protein (formin) Gene Family AT5G07740 51.2 0.0e+00 1154.8
Cme07g00118 . 1 403 FH2 protein (formin) Gene Family AT5G07740 62.6 1.5e-142 505.0
Cme02g01861 CCT 1013 1342 FH2 protein (formin) Gene Family AT5G07760 74.7 1.1e-128 458.0
Cme12g01971 CCT 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.3 1.2e-116 417.9
Cme02g01069 . 866 1186 FH2 protein (formin) Gene Family AT5G07760 64.4 1.1e-109 394.8
Cme04g01449 . 887 1208 FH2 protein (formin) Gene Family AT5G07760 59.4 2.1e-103 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00799 Cme_Chr04 FPKM 10.323421 10.210627 10.563188 10.698564 11.225715 6.635824 9.689864 1.095787 1.969781 1.158928