Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00799 ATGACATTTCGACAACTTATGGGTGTTGCAAAAAGGAGATGTTTGGTTGTTCTGGTGATTCTCATCTGTGCTTCTTTAGCGACTTGCTTGAAGAACCACGAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTAGTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTGGTTAAGTGCAACTTGGATTTGTTTCAGTTAAGGGAAGCTGCCGATGGTATTGACCTCTGTTTCGAAGAAACACCCAGAAGCACAAACGGAATTAACTTTGAATGTCGGATGCTGACAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAGACTCTTTTAGATTGTTTAAGAAAAAAAATTCATGTCTCTGGAAAAGACTACAGCTCTGAAACTTGGTACACCAGGTATTTGGAGTCGGTGTTTTTAATTCCTGGTAGTCTTAGAAGGAAGTTAAGTTCTAGATTGCTTCGAAATGCTAAAGAAGGCACTGCTCCCGCACCTGAATCTTCAGCTGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAGAAAGAAAAGAAATCTAATAATAATCAAACAGTCATCATCGCTGTTGTTGTAACAGCAACGGTGACTTTTATTATTGTAGCTCTGCTATTTTTGTGCTATAACAAGAGTGGCTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAATCATGAACTTTCAGGTTCTTCCCCCAAATATTCTGCTTTTGGGGATTCTCTTAAGGATGACAAGCTCATGAATCAATCGTCTAGCTTAAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAGCCTGCACATTGTCTCTGACGGTGGGCGTACTTCAATGCAGGGACCTCCATCTTTTGGAGCTGCTGGAATTGCCAATAGTTCATCTTTTGGATCAACGAATATGGCTGGCAGTAGTAATGGTTTGGTGCCACCTCCTCCAGGAGCAGTGCCAGTCACCTCAGAAATTTTACCTCCTCTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACGCCCTTCGTCTTTTAAGCCCCCATCCAGCATGGCTAGTCCTCCTCCTCCTCCACCACCTCCTGCACCACCACCACCAAGACCACCGGGAAATTCAGTTCGCCCTCCAGGACCTCCTCCACCTCCACCACCTATACCAGGCAAGGCAGGCCCTCGCCCACCACCACCTCCCAGAAGTGGTATTGCTCCTCCTCGGCCACCTCCATTAGCACACAAAGGTGCAAATCCACCTCGACCTCCCAAGCCTTTTGGTTTAGGTGATGATGAAATGGACGAATCAGGTGTTCCCAAAGCCAAATTAAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGATATACGCCTGTAGATAAAACCAAAACTGAGGGTAAGAAGGAGTCATCATCACAAGATCCTGGACATCAGTACATTCAGATTATTGATTCAAAGAAAGCGCAAAATCTGTCCATTCTTCTGCGAGCGCTAAATGTGACAAAAGAAGAAGTCTGTGATGCGCTTCATGAAGGAACTGAACTTCCTTCCGAACTTCTAGAGAACTTGCTGCGGATGGCACCAACTCCAGAAGAAGAACTCAAACTTAGACTTTTTAGCGGGGAACTTTCTCAACTTGGAAATGCTGAGCGTTTTCTTAAATGTTTGGTTGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATTGGCACTCTTCAGGAGGACATCACCATCACTAAAGACTCCTTCGTTAACTTGGAGGTTGCTTGTAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTTAAGACGGGCAATCGAATGAACGATGGAACTTTTCGTGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCGGATGTGAAAGGAAAAGATGGCAAGACTACATTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGGATAAGAGCTGCTCGGAATGGCACAGGAAGTCAGAGCTTCTCAAGCACCTCATCAAAGGATTTGCTGGATGATACTACTGACACCGAAGAGCATTACCGTGCCTTGGGTCTTCAGGTTGTCTCAGGGTTGAGTGGTGAACTTCAGAATGTGAAGAAAGCAGCAACGATAGATGCTGATGCCTTGACTGGAACTGTTTCGAAACTTGGGCATGGACTCTTAAAGACAAGAGACTTTCTGAATAAAGACCTGCGGGGTCTAGCTGAAGAGAGTCAATTTCACGAAACACTGAAAGTCTTTGTGCAGAATGCGGAGGCTGATATCATGGCCCTCCTGGAAGAAGAAAAAAGAATCATGGAATTGGTGAAAAGCACAGGCGACTACTTCCATGGAAATGCAGGAAAAGACGAGGGCTTACGATTGTTTGTAATTGTGAGAGATTTCTTGATAATGATAGATAAGACATGCCGAGAAATAAAGGAGGCACAGAAAAAGCATGCAAAGGGACACAGAAAGGCAGTGTCATCTTCTGATATCCACCCGCCTTCGTCTTCGTTATCTACTGATATCAATCACCACCCTCCGTCGTCTACCAATATCAATCAACCCCCGTCATCTACCGATATCAGTCAACCCCTATCAACTACAGTTTCTGATCTACGACACCCTCCTTCTCCTGATTTGAATCAGCTGATTTTTCCTGCAATCACTGATCGTCGGATGGGTAACTCAAGTTCAGATGATGAGGAGAGTCCGTAG 2871 44.76 MTFRQLMGVAKRRCLVVLVILICASLATCLKNHEEEELILSQLADPISGDVNTEMAELLLVKCNLDLFQLREAADGIDLCFEETPRSTNGINFECRMLTKEKTNRMLRAMHPQMKQTLLDCLRKKIHVSGKDYSSETWYTRYLESVFLIPGSLRRKLSSRLLRNAKEGTAPAPESSADEKPSRKASSTSGQKEKKSNNNQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLNHELSGSSPKYSAFGDSLKDDKLMNQSSSLSHHQRAPSLDGSLHIVSDGGRTSMQGPPSFGAAGIANSSSFGSTNMAGSSNGLVPPPPGAVPVTSEILPPLKPPPGRAVPLPPERPSSFKPPSSMASPPPPPPPPAPPPPRPPGNSVRPPGPPPPPPPIPGKAGPRPPPPPRSGIAPPRPPPLAHKGANPPRPPKPFGLGDDEMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPGHQYIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKCLVDIPFAFKRLESLLFIGTLQEDITITKDSFVNLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAARNGTGSQSFSSTSSKDLLDDTTDTEEHYRALGLQVVSGLSGELQNVKKAATIDADALTGTVSKLGHGLLKTRDFLNKDLRGLAEESQFHETLKVFVQNAEADIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKTCREIKEAQKKHAKGHRKAVSSSDIHPPSSSLSTDINHHPPSSTNINQPPSSTDISQPLSTTVSDLRHPPSPDLNQLIFPAITDRRMGNSSSDDEESP 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9745980 9752903 - MELO3C018134.2.1 Cme04g00799 325060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00799 956 Coils Coil 805 825 - -
Cme04g00799 956 PANTHER FORMIN-RELATED 386 953 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cme04g00799 956 PANTHER FORMIN-RELATED 11 136 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cme04g00799 956 PANTHER FORMIN-RELATED 166 391 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cme04g00799 956 SMART it6_source 451 871 IPR015425 -
Cme04g00799 956 MobiDBLite consensus disorder prediction 881 927 - -
Cme04g00799 956 MobiDBLite consensus disorder prediction 867 956 - -
Cme04g00799 956 MobiDBLite consensus disorder prediction 272 455 - -
Cme04g00799 956 PANTHER FORMIN-LIKE PROTEIN 3 386 953 - -
Cme04g00799 956 ProSiteProfiles Formin homology-2 (FH2) domain profile. 451 882 IPR015425 -
Cme04g00799 956 PRINTS Proline rich extensin signature 357 369 - -
Cme04g00799 956 PRINTS Proline rich extensin signature 369 390 - -
Cme04g00799 956 PRINTS Proline rich extensin signature 332 348 - -
Cme04g00799 956 PRINTS Proline rich extensin signature 401 417 - -
Cme04g00799 956 Gene3D Formin, FH2 domain 456 883 IPR042201 -
Cme04g00799 956 Pfam Formin Homology 2 Domain 457 855 IPR015425 -
Cme04g00799 956 MobiDBLite consensus disorder prediction 164 196 - -
Cme04g00799 956 SUPERFAMILY Formin homology 2 domain (FH2 domain) 400 874 - -
Cme04g00799 956 MobiDBLite consensus disorder prediction 309 328 - -
Cme04g00799 956 MobiDBLite consensus disorder prediction 332 444 - -
Cme04g00799 956 PANTHER FORMIN-LIKE PROTEIN 3 11 136 - -
Cme04g00799 956 PANTHER FORMIN-LIKE PROTEIN 3 166 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00799 Cme-Chr4:9745980 Cme11g00355 Cme-Chr11:3644288 2.62E-121 dispersed
Cme04g00799 Cme-Chr4:9745980 Cme12g01971 Cme-Chr12:25543931 5.33E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00799 - - cmo:103494960 1013.45