Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00805 ATGGTTTCCCCCGAAAATCCCAATTGGTTGTTCGATTATGGTTTGATCGAAGACATCCCTGTACCCGATGGGAATTTCCCGGTCACGAGCTCAAGCTTCTCTTGGGCTATTCAGACCTTTAACGGCGCCCATGATACCGGTGTGGAAATTGATGGATCGTTGGCAGATCTGGATGGCCGTCTAGAATCAGGCTCAAAGAAGCGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTTGATGCAGTTCGAATGGCTGAGAAGAACGAACTTCGCGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTAAAGTCCATGCCTGCTCAACAACCTGGCTTCTTACCTCCACCAATACCTACATTTCCTGCTCAGGGTCAAGCTCCTGGCAATAAGTTATTTCCTTTCATTGGTTACCACCCGAGTGTTGCCATGTGGCAATTCATGCCACCTGCTGCGGTGGACACATCACAGGACCACATACTCCGGCCACCCGTCGCCTAA 630 49.84 MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFSWAIQTFNGAHDTGVEIDGSLADLDGRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFPAQGQAPGNKLFPFIGYHPSVAMWQFMPPAAVDTSQDHILRPPVA 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10002629 10005766 - MELO3C018125.2.1 Cme04g00805 325066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00805 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 144 IPR036638 GO:0046983
Cme04g00805 209 PANTHER BHLH TRANSCRIPTION FACTOR 123 209 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cme04g00805 209 Pfam Helix-loop-helix DNA-binding domain 79 121 IPR011598 GO:0046983
Cme04g00805 209 PANTHER BHLH TRANSCRIPTION FACTOR 1 122 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cme04g00805 209 PANTHER TRANSCRIPTION FACTOR ILR3 1 122 - -
Cme04g00805 209 SMART finulus 81 134 IPR011598 GO:0046983
Cme04g00805 209 CDD bHLH_AtILR3_like 83 148 - -
Cme04g00805 209 Gene3D - 78 154 IPR036638 GO:0046983
Cme04g00805 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Cme04g00805 209 Coils Coil 121 152 - -
Cme04g00805 209 PANTHER TRANSCRIPTION FACTOR ILR3 123 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00805 Cme-Chr4:10002629 Cme11g00758 Cme-Chr11:9430545 6.06E-71 dispersed
Cme04g00805 Cme-Chr4:10002629 Cme04g00808 Cme-Chr4:10064076 6.28E-146 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41168 PF00010 HLH 1.70E-08 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00805 - - csv:101215402 380.563