Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00806 ATGGACAACACTGTAAAAATTTGGTCAATGAAAGAGTTCTGGACATACGTGGAAAAATCTTTTACCTGGACAGATCTTCCATCAAAGTTTCCCACCAAGTATGTCCAGTTTCCAGTGTTCATAGCATCAGTTCATTCAAATTATGTTGATTGCAGTAGGTGGCTCGGTGATTTTATTCTTTCAAAGAGTGTTGACAATGAGATTGTGTTATGGGAACCAAAAATGAAGGAACAGTCACCTGGAGAGGGTACTGTGGATATTCTTCAGAAGTATCCTGTTCCTGAGTGTGATATTTGGTTTATCAAGTTTTCCTGTGATTTTCATTATAATGCAGCTGCTATAGGTAATTCCATCTCATGCCTAGCAACCAATTCATGCCAAGGCATTGCAACATAG 396 38.64 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCSRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYNAAAIGNSISCLATNSCQGIAT 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10021721 10026267 + MELO3C018124.2.1 Cme04g00806 325067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00806 131 Gene3D - 1 128 IPR015943 GO:0005515
Cme04g00806 131 PANTHER POLYCOMB GROUP PROTEIN FIE1 1 118 - -
Cme04g00806 131 PANTHER POLYCOMB PROTEIN 1 118 - -
Cme04g00806 131 SUPERFAMILY WD40 repeat-like 2 116 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00806 K11462 EED; polycomb protein EED - csv:101214918 253.832
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g432 . . . Bda09g00384 . Bpe08g01140 . . . . . . . Car09g00842 Sed04g3180 Cpe06g00746 . Bhi09g01944 Tan01g4508 Cmetu04g2640 . Hepe01g1309 . . . . . . . . . Cone6ag0087 Cone9ag0102 . . Lsi04g01241 . Chy04g01012 . . . . . . . Bma07g01314 . . . . . . . . . . . . . . . . . Cla05g01537 Cam05g1644 Cec05g1650 . Clacu05g1638 Cmu05g1533 Cre05g1643 . . . Cme04g00806
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011571 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00806 Cme_Chr04 FPKM 34.359192 33.709942 0.2505 0.167878 2.26796 3.054491 2.544913 1.116864 1.075535 1.064497