Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00808 ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGAAGATATCCCTGTACCCGATGGGAATTTCCCGGTCACGAGCTCAAGCTTCACTTGGGCTATTCAGCCCTTTAACGGCGCCCATGATACCGGTGTGGAAATTGATGGATCGTTGGCAGATGTGGATGGCCGTCTAGAATCAGGCTCAAAGAAGCGGGTTAGATCTGATTCTTGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTTGATGCAGTTCGAATGGTGAATCAGCTGCGTAGTGAAACACATAAACTAAAGGAGTCAAATTCTAGTCTCCAGGAGAAGATCAAAGAGTTGAAGGCTGAGAAGAACGAGCTTCGTGATGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTAAAGTCCATGCCTGCTCAACAACCTGGCTTCTTACCACCAATACCCACATTTCCTGCTCAGGGTCAAGCTCCTGGCAATAAGTTATTTCCTTTCGTTGGTTACCACCCAAGTGTTGCTATGTGGCAATTCATGCCACCTGCTGCGGTGGACACGTCACAGGATCACGTACTCCGGCCACCTGTTGCCTAA 705 48.09 MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFTWAIQPFNGAHDTGVEIDGSLADVDGRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRSETHKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPIPTFPAQGQAPGNKLFPFVGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10064076 10067506 - MELO3C018123.2.1 Cme04g00808 325069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00808 234 CDD bHLH_AtILR3_like 83 155 - -
Cme04g00808 234 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Cme04g00808 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Cme04g00808 234 PANTHER TRANSCRIPTION FACTOR ILR3 1 234 - -
Cme04g00808 234 Coils Coil 123 178 - -
Cme04g00808 234 Gene3D - 66 124 IPR036638 GO:0046983
Cme04g00808 234 SMART finulus 81 132 IPR011598 GO:0046983
Cme04g00808 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983
Cme04g00808 234 CDD bZIP 141 173 - -
Cme04g00808 234 PANTHER BHLH TRANSCRIPTION FACTOR 1 234 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cme04g00808 234 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00808 Cme-Chr4:10064076 Cme11g00758 Cme-Chr11:9430545 2.53E-85 dispersed
Cme04g00805 Cme-Chr4:10002629 Cme04g00808 Cme-Chr4:10064076 6.28E-146 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41169 PF00010 HLH 1.10E-09 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00808 - - csv:101215402 444.891