Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g00808 | ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGAAGATATCCCTGTACCCGATGGGAATTTCCCGGTCACGAGCTCAAGCTTCACTTGGGCTATTCAGCCCTTTAACGGCGCCCATGATACCGGTGTGGAAATTGATGGATCGTTGGCAGATGTGGATGGCCGTCTAGAATCAGGCTCAAAGAAGCGGGTTAGATCTGATTCTTGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTTGATGCAGTTCGAATGGTGAATCAGCTGCGTAGTGAAACACATAAACTAAAGGAGTCAAATTCTAGTCTCCAGGAGAAGATCAAAGAGTTGAAGGCTGAGAAGAACGAGCTTCGTGATGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTAAAGTCCATGCCTGCTCAACAACCTGGCTTCTTACCACCAATACCCACATTTCCTGCTCAGGGTCAAGCTCCTGGCAATAAGTTATTTCCTTTCGTTGGTTACCACCCAAGTGTTGCTATGTGGCAATTCATGCCACCTGCTGCGGTGGACACGTCACAGGATCACGTACTCCGGCCACCTGTTGCCTAA | 705 | 48.09 | MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFTWAIQPFNGAHDTGVEIDGSLADVDGRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRSETHKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPIPTFPAQGQAPGNKLFPFVGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10064076 | 10067506 | - | MELO3C018123.2.1 | Cme04g00808 | 325069 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g00808 | 234 | CDD | bHLH_AtILR3_like | 83 | 155 | - | - | |
Cme04g00808 | 234 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 125 | 179 | - | - | |
Cme04g00808 | 234 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983 | |
Cme04g00808 | 234 | PANTHER | TRANSCRIPTION FACTOR ILR3 | 1 | 234 | - | - | |
Cme04g00808 | 234 | Coils | Coil | 123 | 178 | - | - | |
Cme04g00808 | 234 | Gene3D | - | 66 | 124 | IPR036638 | GO:0046983 | |
Cme04g00808 | 234 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983 | |
Cme04g00808 | 234 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 75 | 146 | IPR036638 | GO:0046983 | |
Cme04g00808 | 234 | CDD | bZIP | 141 | 173 | - | - | |
Cme04g00808 | 234 | PANTHER | BHLH TRANSCRIPTION FACTOR | 1 | 234 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
Cme04g00808 | 234 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 126 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g00808 | Cme-Chr4:10064076 | Cme11g00758 | Cme-Chr11:9430545 | 2.53E-85 | dispersed | |
Cme04g00805 | Cme-Chr4:10002629 | Cme04g00808 | Cme-Chr4:10064076 | 6.28E-146 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41169 | PF00010 | HLH | 1.10E-09 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g00808 | - | - | csv:101215402 | 444.891 |