Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00837 ATGCGATGTTTGATTCCCACACCCTTTTTGCTAATTTTTGTGCTTCTCTCCAATCTCCAGCTCTGTTTTTCACAAGATTACATTATTGGTGGTGGTGCTGGTGATGGTGCTGGTGACTCTCCGCCCGAGGCAGGGGCGCCACCGGAGCAAAATGAATGTAATGGTATATTCTTAACGTACACATTCTTTTCAAGGGAAAAAGAATTTCCTCATGTGAAGAATGCTTCTGCTCAGGCTTGGGCGTTCAGAGCTCAGGCGACGTTGTTGAACGCCGGCACCACGGAGCTGGAGGGTTGGAAGATGTATATTGGGTTTCAACATAGAGAGATTTTAGTGTCGGCGAGTGGGGCAGTGTTGGTGGACGGTTCGGATTTTCCGGCGGATGTGGGGAAAGGGGTGATCTTGGCTGGGTACACACAAACGGACTTGAAAACGGCGATAGAAACGGCCGGAGATTATAACCAAATGCAGGTGACGATTGATATCACGGGAACACAATTCGGCGTGAAGAAGAATGGAATTCCGATGCCGAAAACGATTCGCCTTGAAAACGAAGGGTTTAAGTGTCGGCAGCCACGCCGTCGTCGCAACAAAAGCTATATGCATGTTTGCTGCAAGAAAGACCCCAAATTCAAGGAAAAACCACCAAAGAAGACTAAGTTTTTGCCAAGACAAAACGGCCATCTCTCCCTCACCTATGACGTCCTCCAAGCTTACGGCAACAACTATCTCGCACAAGTCACCATTGACAACAACCACCCTCTCGGCCGCCTCGACCATTGGAACTTAACTTGGGAATGGATGAGAGGAGAATTCATTTCCACCATGAGAGGAGCTTATACCCACAAAATTGATTCCTCCGACTGCATCTTTGGCCCTCAAGGCCAATACTATCAAGATTTTGACTTCTCCCAAGTCATGAATTGTGAGAAACATCCCATCATTGCCGACCTTCCTTCCGATCGAGCCAACGATTCCAAGGTTGGGAAGTTACCCTTCTGCTGCAAGAATGGCACGATCTTACCGTCATTGATGGATCAAAGCAAAGCAAGGTCTATTTTTCAGCTCCAAGTCTATAAACTTCCTCCTGACTTCAATAGAACTGCCTTGTACCCTCCTCAGAAATGGAAGATTAATGGCATTCTTAACCCCAATTACAAATGTGGAGCTCCTATTAGAGTTGAACCAACAGAATTTCCTGACTCGTCTGGACTTCAAGCCATAACCACAGCCATTGCTAGTTGGCAAGTGGTTTGCAACATTACAACTCCAAAACCTAAACAATCAAAATGTTGTGTTTCTTTCTCTGCTTATTATAATGACTCTGCTATCCCTTGCAATACTTGTGCTTGTGGATGTGATGAACCTCAAACTTGCAACCCAAATTCTTCTCCATTGCTTCTTCCACCAGAAGCCCTTTTAGTTCCATTTGACAATAGAACTATAAAGGCAAAAGCTTGGGCCAAAATCAAACACTTACCAATCCCAAAGAAGCTCCCTTGTCCTGATAATTGTGGAGTTAGTTTAAATTGGCATATAAACTCAGATTATACCAGTGGTTGGACTGCTAGAATCACTCTTTTCAATTGGGAAGAATACCCTTTTGAGGATTGGTTTGCTGCTGTTCAATTGGATAAAGCTGCTAAAGGCTATGAGAATGTGTACTCTTTCAATGGGACTAAACTCCCACCAGAAATGATCAAGAACACCATCTTGTTTCAAGGATTGGAAGGTTTGAATTACCTGATGGGGGAGACGAATGGAACGGACCCAAAATTCGATCCGAGAGTACCGGGAAAGCAACAATCAGTGATTTCGTTCACTAAGAAGAATATGAGGAACCTGATCAATATAAAGGAAGGAGATGGATTCCCTTCAAAGGTATATTTCAATGGAGAAGAGTGTGCACTTCCTCCTCATATTCCTTTAGGAAATGGTGCTGCACATAGCCTTCATGTCAGCTCTGAACCTTTAATGCTGCTGTTTACGGTTGTGGCCTTTTTCATTCTCTTCATTGATGGCTTTCATTGA 2031 44.26 MRCLIPTPFLLIFVLLSNLQLCFSQDYIIGGGAGDGAGDSPPEAGAPPEQNECNGIFLTYTFFSREKEFPHVKNASAQAWAFRAQATLLNAGTTELEGWKMYIGFQHREILVSASGAVLVDGSDFPADVGKGVILAGYTQTDLKTAIETAGDYNQMQVTIDITGTQFGVKKNGIPMPKTIRLENEGFKCRQPRRRRNKSYMHVCCKKDPKFKEKPPKKTKFLPRQNGHLSLTYDVLQAYGNNYLAQVTIDNNHPLGRLDHWNLTWEWMRGEFISTMRGAYTHKIDSSDCIFGPQGQYYQDFDFSQVMNCEKHPIIADLPSDRANDSKVGKLPFCCKNGTILPSLMDQSKARSIFQLQVYKLPPDFNRTALYPPQKWKINGILNPNYKCGAPIRVEPTEFPDSSGLQAITTAIASWQVVCNITTPKPKQSKCCVSFSAYYNDSAIPCNTCACGCDEPQTCNPNSSPLLLPPEALLVPFDNRTIKAKAWAKIKHLPIPKKLPCPDNCGVSLNWHINSDYTSGWTARITLFNWEEYPFEDWFAAVQLDKAAKGYENVYSFNGTKLPPEMIKNTILFQGLEGLNYLMGETNGTDPKFDPRVPGKQQSVISFTKKNMRNLINIKEGDGFPSKVYFNGEECALPPHIPLGNGAAHSLHVSSEPLMLLFTVVAFFILFIDGFH 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10529127 10533185 - MELO3C018094.2.1 Cme04g00837 325098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00837 676 Pfam COBRA-like protein 243 422 IPR006918 GO:0010215|GO:0031225
Cme04g00837 676 PANTHER COBRA-LIKE PROTEIN 7 10 669 - -
Cme04g00837 676 PANTHER COBRA-LIKE PROTEIN 10 10 669 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00837 - - - csv:101216608 984.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00837 Cme-Chr4:10529127 Cme06g02279 Cme-Chr6:29983882 0 dispersed
Cme04g00837 Cme-Chr4:10529127 Cme02g01812 Cme-Chr2:24896065 1.59E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g01006 . 1 402 COBRA Gene Family AT5G60920 75.4 7.0e-195 676.8
Cme02g01812 . 55 452 COBRA Gene Family AT5G60920 68.9 8.4e-180 626.7
Cme07g01007 . 1 390 COBRA Gene Family AT5G60920 68.5 3.3e-176 614.8
Cme02g01813 CCT,ECH 48 361 COBRA Gene Family AT5G60920 81.9 3.4e-165 578.2
Cme12g01924 CCT,ECH 1 396 COBRA Gene Family AT5G60920 60.5 7.1e-147 517.3
Cme06g01212 . 50 441 COBRA Gene Family AT5G60920 53.4 2.2e-127 452.6
Cme07g01006 . 1 405 COBRA Gene Family AT3G02210 75.1 1.2e-190 662.9
Cme02g01812 . 27 433 COBRA Gene Family AT3G02210 68.2 4.6e-179 624.4
Cme07g01007 . 1 390 COBRA Gene Family AT3G02210 66.8 1.2e-166 583.2
Cme02g01813 CCT,ECH 23 361 COBRA Gene Family AT3G02210 75.2 6.0e-163 570.9
Cme12g01924 CCT,ECH 3 381 COBRA Gene Family AT3G02210 62.0 6.7e-146 514.2
Cme06g01212 . 23 436 COBRA Gene Family AT3G02210 54.2 6.3e-136 481.1
Cme07g01006 . 1 400 COBRA Gene Family AT3G29810 72.3 7.9e-184 640.2
Cme02g01812 . 38 435 COBRA Gene Family AT3G29810 67.3 3.0e-175 611.7
Cme07g01007 . 1 375 COBRA Gene Family AT3G29810 67.2 1.8e-164 575.9
Cme02g01813 CCT,ECH 21 357 COBRA Gene Family AT3G29810 75.4 2.1e-160 562.4
Cme12g01924 CCT,ECH 1 399 COBRA Gene Family AT3G29810 57.9 3.3e-142 501.9
Cme06g01212 . 32 445 COBRA Gene Family AT3G29810 53.6 1.8e-135 479.6
Cme02g01812 . 32 363 COBRA Gene Family AT5G15630 84.0 1.2e-179 625.9
Cme07g01007 . 1 304 COBRA Gene Family AT5G15630 82.6 3.8e-162 567.8
Cme02g01813 CCT,ECH 31 362 COBRA Gene Family AT5G15630 73.6 3.1e-151 531.6
Cme07g01006 . 1 310 COBRA Gene Family AT5G15630 67.7 4.9e-133 471.1
Cme12g01924 CCT,ECH 1 302 COBRA Gene Family AT5G15630 61.9 1.3e-120 429.9
Cme06g01212 . 38 356 COBRA Gene Family AT5G15630 50.6 1.4e-95 346.7
Cme02g01813 CCT,ECH 16 224 COBRA Gene Family AT5G60950 56.2 6.5e-64 240.7
Cme02g01812 . 51 231 COBRA Gene Family AT5G60950 58.0 4.0e-58 221.5
Cme07g01006 . 1 172 COBRA Gene Family AT5G60950 59.3 1.5e-57 219.5
Cme07g01007 . 1 172 COBRA Gene Family AT5G60950 55.8 9.7e-52 200.3
Cme12g01924 CCT,ECH 3 174 COBRA Gene Family AT5G60950 51.2 3.4e-41 165.2
Cme06g01212 . 31 429 COBRA Gene Family AT1G09790 59.5 1.2e-147 520.0
Cme02g01812 . 41 434 COBRA Gene Family AT1G09790 53.7 1.7e-133 473.0
Cme07g01006 . 12 379 COBRA Gene Family AT1G09790 55.8 4.0e-127 451.8
Cme07g01007 . 4 375 COBRA Gene Family AT1G09790 51.7 4.3e-121 431.8
Cme02g01813 CCT,ECH 32 357 COBRA Gene Family AT1G09790 52.0 9.9e-102 367.5
Cme06g00765 . 39 639 COBRA Gene Family AT4G16120 67.3 2.4e-253 871.7
Cme06g02279 . 89 698 COBRA Gene Family AT4G16120 53.3 9.6e-202 700.3
Cme04g00837 . 49 654 COBRA Gene Family AT4G16120 52.5 2.2e-198 689.1
Cme06g00765 . 12 639 COBRA Gene Family AT3G16860 62.8 1.8e-240 828.9
Cme06g02279 . 89 685 COBRA Gene Family AT3G16860 53.1 3.3e-194 675.2
Cme04g00837 . 47 655 COBRA Gene Family AT3G16860 51.3 1.9e-189 659.4
Cme06g00765 . 7 650 COBRA Gene Family AT5G49270 59.7 1.9e-237 818.9
Cme06g02279 . 89 684 COBRA Gene Family AT5G49270 51.3 1.9e-194 676.0
Cme04g00837 . 53 650 COBRA Gene Family AT5G49270 51.6 2.5e-189 659.1
Cme04g00837 . 10 673 COBRA Gene Family AT3G20580 60.5 7.4e-250 860.1
Cme06g02279 . 28 705 COBRA Gene Family AT3G20580 60.4 1.8e-248 855.5
Cme06g00765 . 32 631 COBRA Gene Family AT3G20580 54.7 7.2e-205 710.7
Cme06g02279 . 89 706 COBRA Gene Family AT4G27110 61.8 3.2e-237 818.1
Cme04g00837 . 47 661 COBRA Gene Family AT4G27110 60.5 8.4e-230 793.5
Cme06g00765 . 15 657 COBRA Gene Family AT4G27110 51.9 4.8e-201 698.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002898 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 1 1 2 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00837 Cme_Chr04 FPKM 2.811594 3.644076 3.634273 2.95639 3.04438 3.001742 2.938271 4.946961 4.957282 3.893483