Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00844 ATGGCAAGTAATAACCTAGAAAGCAATTATGAAGATGTTGGTTCTTCTCCTCACACTCCCTATTCTCCTCAATGTTCCTCCAACTTTCACCTCTTGGATAATTCAGCATCATCAAACTCCAATGTAAGAAGCAATAATGATAGTAATCAACTCCATAGAGCAAGTGACCTTCTCATGGCAGTCTCAGTTTGCACCGAAGAAAATCGGTTGAGAATCAACGAGCTCGTCAACGCTGCCATGGATGAGCTCACGAAAGTAGCCCTTGATGGAGATCCTCTGTGGAAGCCACAAGAAAATGATCAAGATCAAGCTGATTCTTACTATACATTGATGGATATAATGAAAATGGTTGAGGTTGGTGAGACTCAATTTAGTGATCTTTTAGATCTTGAAATTGGCAACCCCGAACCAAGCATTGATAATCAAAACAATACAACGTTTGGTCATGAAGACAAACAACAAGAACAACACCATTTTCAAACTGAATTTTCAAGACAAATTGCCTATGTCAAAATGGAGCCACTCAGAATTGTTGGGTTTTTTATGGATTTGGAACAATGGACTTATGTCTTCTCTGACATTGTTGCAAGAGCAGCAATTCTTAAAACTTGGTCATCAATGGAACCTGTTGGAGGGAACTACAATGGAACTTTGCTAGTGATGAGAGCTGAGTTTCAAATCCCCTCGCCAATTGTTGAGACAAGAGAGAGTTGTTTTGGGAGGTTTTGCAAACAATTAGCCCCATATACATGGGGAATTGTTGATGTTTCCTTGGAAGATCTCTTCCCTTATCCATTACCTGTTGGTTTTAGAAGAAAACCTTCTGGCTGTTTAATCCAAGCATCTCCAAATGATCTCTCCAAGGTGATATGGGTAGAACATATGGAAGTTGATCAGCAAACAATAATGGTTAATGAAATGTACGAAGCTTACATCAATTCAGGATTGGCATTTGGTGCAAAGCGATGGGTTTCCTCTTTGGTTAGACATTGCACTTGGGAAGCTACTTTAATGGCTATGAGTTGTTCAACACTCAACGGAGAAAAGAATAGTGTGTGTAACAAGTCTTTGGTGATGATCTGTGTAGTATTACTATTACAAGCTGGAAGGTTAAGTGTGTTGAAGTTGGCTGAGAGAATGACAAAGAGTTTCTACAGAAATGTGAGTAGTTCTAAAGAAAATCCATGGGTTAAAATTCCCTTTCCTGGACCTCAAGACATTAGGGTTGTGGTGACCCCAAATCTCAATGATGATCCTGGAAGACCTCCATGTACCTCGGTGGTTTTCGCCACCTCCGTTCACGTTCCGACCAACCCTAAGCATCTTTTCCATTACCTTCGTCATGAGAAGTCTCGTAACAAGTGGGACATCCTTTCATACGGTCATGTCATTACAGAACTTTCTTGCATCATCAATGGCACCGATTCAAGAAACAGAGTGTCCATAATTCAAGTGAACTCAGCACCAAGACGAATCGAAATCTTTTACCTGCAAGAGAGTTTCTTTGACGCATCGGGGTCCTATATAGTCTTTGCACCTGTTGATATCTACGCAATGGCAGTGGTCTTACGTGGAGGAAACCCAGATTACGTGGCTATCTTGCCTTCTGGCTTCGCAATCCTTCCCGATAGACCAAGAATGAATGGGGAGGAAGATGTAGCTGATGGAAGCATTTTAACAGTTGCTCTCAACATCATCGATCATTCAACCGATGACGATATTGAGAGGAGTAAAAACTTGAAAATGAGAAATTATTGCCCTATGCTACCTCAGGGTTCATCATCTCCTTGGAAGAATATCTGA 1803 40.93 MASNNLESNYEDVGSSPHTPYSPQCSSNFHLLDNSASSNSNVRSNNDSNQLHRASDLLMAVSVCTEENRLRINELVNAAMDELTKVALDGDPLWKPQENDQDQADSYYTLMDIMKMVEVGETQFSDLLDLEIGNPEPSIDNQNNTTFGHEDKQQEQHHFQTEFSRQIAYVKMEPLRIVGFFMDLEQWTYVFSDIVARAAILKTWSSMEPVGGNYNGTLLVMRAEFQIPSPIVETRESCFGRFCKQLAPYTWGIVDVSLEDLFPYPLPVGFRRKPSGCLIQASPNDLSKVIWVEHMEVDQQTIMVNEMYEAYINSGLAFGAKRWVSSLVRHCTWEATLMAMSCSTLNGEKNSVCNKSLVMICVVLLLQAGRLSVLKLAERMTKSFYRNVSSSKENPWVKIPFPGPQDIRVVVTPNLNDDPGRPPCTSVVFATSVHVPTNPKHLFHYLRHEKSRNKWDILSYGHVITELSCIINGTDSRNRVSIIQVNSAPRRIEIFYLQESFFDASGSYIVFAPVDIYAMAVVLRGGNPDYVAILPSGFAILPDRPRMNGEEDVADGSILTVALNIIDHSTDDDIERSKNLKMRNYCPMLPQGSSSPWKNI 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10640836 10645656 + MELO3C018088.2.1 Cme04g00844 325105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00844 600 SMART START_1 116 333 IPR002913 GO:0008289
Cme04g00844 600 MobiDBLite consensus disorder prediction 1 26 - -
Cme04g00844 600 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 33 576 IPR042160 -
Cme04g00844 600 MobiDBLite consensus disorder prediction 136 155 - -
Cme04g00844 600 Pfam START domain 154 331 IPR002913 GO:0008289
Cme04g00844 600 SUPERFAMILY Bet v1-like 73 331 - -
Cme04g00844 600 PANTHER PROTEIN FWA, PUTATIVE-RELATED 33 576 - -
Cme04g00844 600 SUPERFAMILY Bet v1-like 369 544 - -
Cme04g00844 600 CDD START_ArGLABRA2_like 71 331 - -
Cme04g00844 600 ProSiteProfiles START domain profile. 65 336 IPR002913 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00844 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101212560 1027.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00844 Cme-Chr4:10640836 Cme11g00781 Cme-Chr11:9888700 1.16E-117 dispersed
Cme04g00844 Cme-Chr4:10640836 Cme01g00416 Cme-Chr1:2932684 7.72E-118 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g464 . . . . . . . . . . Cma01g01144 . . . . . Cpe02g00755 . . . . . . . . . . . . . . . . . . Lsi04g01227 . . . . . . . . . . . . Cmo01g01197 . . . . Car16g00556 . . . . . . . . . Cla05g01515 Cam05g1629 Cec05g1633 Cco05g1662 Clacu05g1614 Cmu05g1514 . . . . Cme04g00844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013609 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00844 Cme_Chr04 FPKM 7.606061 9.050896 144.543793 140.510757 0.261972 0.438476 0.0 3.898402 3.801798 2.960459