Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00849 ATGGTTGCCTCTACTGCCCTCAACTGCAAAATCCCCACCATTTCACCCTCCCCTTCCCATTCAAATAACAAGATCTCTTCTTCTATCCCTCACTTTCCTGTCCGTTTCCGGCGAGTTTCCTCCAACCCATCGCCGCTTCTTCGCTCAAACGCCGTCTCCTGCACTTTGACTCGGGAGCCGTCGCTGGCAATGGAGGACAAACTCCATACTTTGAGTCTGCAACAGAGACCGGATTCATTTGGCCGTTTTGGCCGTTTTGGGGGAAAGTATGTCCCCGAGACCCTAATGCACGCCCTCACCGAGCTCGAAGCTGCTTTCTATTCCCTTGCTGGGGACCAAGACTTTCAGAAAGAGCTGGATGGGATTTTGAGAGACTATGTGGGGAGAGAGAGCCCTTTGTACTTTGCAGAGAGGCTGACTGAGCACTATAGACGTTCCAATGGTGAAGGGCCTCATATTTTCCTGAAGAGAGAAGACCTTAACCACACAGGGGCTCACAAAATTAACAATGCTGTTGCCCAAGCTTTGCTTGCTAAGCGTTTGGGAAAGAAACGGATTATAGCTGAAACAGGTGCAGGTCAGCATGGAGTTGCAACTGCAACTGTTTGTGCTAGGTTTGGACTAGAATGTATCATCTACATGGGTGCCCAAGATATGGAAAGACAAGCTCTCAATGTGTTCAGAATGCGGCTTCTTGGGGCCGAGGTTAGGCCAGTTCATTCTGGTACTGCCACACTAAAAGATGCTACTTCAGAAGCTATAAGGGACTGGGTGACTAATGTGGAGACTACCCATTATATCTTAGGATCTGTTGCTGGGCCCCACCCATATCCCATGATGGTGAGAGATTTTCATGCTGTGATTGGTAAAGAAACTAGAAAACAGGCCTTGGAGAAGTGGGGAGGGAAGCCAGATGTCCTAGTAGCATGTGTTGGAGGAGGTTCAAATGCTATGGGACTATTTCATGAGTTTGTCAATGACGAAGATGTTAGGTTGGTTGGTGTGGAGGCTGCAGGTTTTGGCTTGGATAGTGGTAAGCATGCAGCCACTCTAACCAAAGGGGAAGTTGGTGTTCTACATGGAGCGATGAGTTATTTACTACAGGATGACGATGGACAAATAATTGAACCTCACTCGATCAGTGCAGGTTTGGATTACCCTGGGGTTGGACCAGAGCATAGTTATTTGAAAGATCTAGGCCGTGCTGAGTACCACAGTGTAACTGATGATGAAGCACTTGAAGCCTTCAAGAGATTGTCACGACTGGAGGGCATAATCCCAGCTCTGGAGACATCTCATGCTCTGGCTTATCTTGAAAAGTTGTGTCCGACCCTCCCAGATGGAACAAAGGTCGTGCTTAACTGCAGCGGCAGAGGAGATAAGGATGTCCAGACAGCAATCAAGTATTTGCAAGTTTGA 1419 48.13 MVASTALNCKIPTISPSPSHSNNKISSSIPHFPVRFRRVSSNPSPLLRSNAVSCTLTREPSLAMEDKLHTLSLQQRPDSFGRFGRFGGKYVPETLMHALTELEAAFYSLAGDQDFQKELDGILRDYVGRESPLYFAERLTEHYRRSNGEGPHIFLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVNDEDVRLVGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSYLKDLGRAEYHSVTDDEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLPDGTKVVLNCSGRGDKDVQTAIKYLQV 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10782178 10786550 - MELO3C018082.2.1 Cme04g00849 325110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00849 472 Pfam Pyridoxal-phosphate dependent enzyme 128 457 IPR001926 -
Cme04g00849 472 TIGRFAM trpB: tryptophan synthase, beta subunit 81 469 IPR006654 GO:0004834|GO:0006568
Cme04g00849 472 PANTHER TRYPTOPHAN SYNTHASE-RELATED 25 472 - -
Cme04g00849 472 PIRSF Trp_syn_beta 38 472 IPR023026 GO:0000162|GO:0004834
Cme04g00849 472 PANTHER TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED 25 472 - -
Cme04g00849 472 CDD Trp-synth_B 98 465 IPR006654 GO:0004834|GO:0006568
Cme04g00849 472 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 160 174 IPR006653 GO:0004834|GO:0006568
Cme04g00849 472 Gene3D - 128 463 IPR036052 -
Cme04g00849 472 Hamap Tryptophan synthase beta chain [trpB]. 76 470 IPR023026 GO:0000162|GO:0004834
Cme04g00849 472 Gene3D - 83 285 IPR036052 -
Cme04g00849 472 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 77 470 IPR036052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00849 K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] - csv:101220286 919.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00849 Cme-Chr4:10782178 Cme12g01471 Cme-Chr12:22399159 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g472 Blo03g00575 Blo03g01443 Bda07g00347 Bda09g00390 . Bpe08g01133 . . . . Cma01g01141 . . . Sed07g2665 . Cpe02g00759 Bhi09g01922 Tan01g4526 Cmetu04g1540 . Hepe01g1295 Mch11g1169 . . . . . . . . Cone6ag0078 Cone9ag0093 . . Lsi04g01224 . . . . . . . Bpe11g00532 . . Bma14g00349 . Cmo01g01193 . . . . Car16g00553 . . . . . . . . . Cla05g01511 Cam05g1626 Cec05g1630 Cco05g1658 Clacu05g1611 Cmu05g1511 . . . . Cme04g00849
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008087 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00849 Cme_Chr04 FPKM 0.0 0.0 11.051882 12.986517 48.987984 49.174583 46.679508 1.071162 0.114723 0.54251