Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00888 ATGGCGGTTTCTGTCACACTACGAACCTCCACATCCCTTCTCCTTCTCCTTCTCCTCATCTTCTTCCTTCATTCCAGTTTTGCTGAAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCAATGCCCTACCGGTATATTAAGAATGAACATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGCAATAGCACAGAGAGGAGGAACTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATAGATGACTGTTGGCGTTGTGACCCACGTTGGCAATTGCGGCGAAAGCACTTGGCCAACTGCGGCATTGGGTTCGGTCGTAATGCAGTTGGTGGACGTGATGGTCGATACTACGTCGTCTCCGATCCCGGTGATGACGATCCTATCAATCCCCGACCAGGAACCCTTCGCCATGCAGTGATTCAAGACAGGCCATTGTGGATTGTGTTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGTTTCAAGACAATTGATGGCCGTGGTGCTAATGTACACATTGCTTATGGAGCTTGTATTACGATCCAATTCATAACCAACGTCATTATTCATGGTTTGCACATTCACGACTGCAAGCCAACGGGCAATGCCATGGTTCGAAGCTCACCAAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATTTTTGGGTCAAGTCATATTTGGATTGACCATAATTCTCTTTCTTCCTGTGCTGATGGGCTCATTGATGCTGTCATGGGATCAACTGCCATCACAATTTCTAACAACTACTTCACTCACCACAATGAGGTGATGCTCTTGGGTCATAGTGATTCTTATGTAAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGCGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCACGTAGTAAATAATGACTACACTCACTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGCCAACCCTTTTGCCAAAGAGGTAACAAAGAGAGTTGACACACACAACGGTGTATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTATGCTCAATGGAGCCTACTTCACTCCATCAGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGCTCTATTACTTCAAATGCAGGTGCCCTTGCTTGTCGTAGGGGATACCGGTGTTAA 1299 45.8 MAVSVTLRTSTSLLLLLLLIFFLHSSFAEDERLQSFNSSSMPYRYIKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSDPGDDDPINPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVDTHNGVWKHWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSNAGALACRRGYRC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11688753 11694142 + MELO3C012791.2.1 Cme04g00888 325149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00888 432 Gene3D - 83 425 IPR012334 -
Cme04g00888 432 PANTHER PECTATE LYASE 38 429 - -
Cme04g00888 432 SMART amb_all 158 355 IPR002022 -
Cme04g00888 432 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Cme04g00888 432 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Cme04g00888 432 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Cme04g00888 432 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Cme04g00888 432 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Cme04g00888 432 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Cme04g00888 432 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Cme04g00888 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
Cme04g00888 432 SUPERFAMILY Pectin lyase-like 61 426 IPR011050 -
Cme04g00888 432 Pfam Pectate lyase 166 347 IPR002022 -
Cme04g00888 432 PANTHER PECTATE LYASE 18-RELATED 38 429 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00888 Cme-Chr4:11688753 Cme05g00660 Cme-Chr5:7209670 0 dispersed
Cme04g00888 Cme-Chr4:11688753 Cme06g00410 Cme-Chr6:2629054 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00888 K01728 - csv:101207204 851.662