Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00939 ATGGCAGAAATGGCCTGCTCCACTGCCGACCTCCACCACCTCCTCGGCGGCTCAGCCAATGCCACTGCCGTCGCCGAGTACATTTGCAGCCGATTTGAGTCTGTCTCGACGAAATTCGTGGACACGACCTACGCAGTTGACAACACATACCTTTTGTTTTCAGCATACCTTGTATTTGCAATGCAGCTTGGATTCGCAATGCTTTGTGCTGGATCAGTTAGGGCAAAAAACACAATGAATATAATGTTAACAAATGTTCTTGATGCAGCAACTGGTGGAATATTTTATTATGTGTTTGGATTTGCTTTGGCATTTGGAACACCTTCAAACTCCTTCATTGGGCATCATTATTTTGGGCTTTCACAATTCCCATCTTCTTCGTTTGATTATGGGTTCTTTTTGTTTCAATGGGCATTTGCAATTGCTGCTGCTGGAATTACGAGTGGATCCATCGCTGAAAGAACTCAATTTGTTGCTTATTTGATCTATTCTTCTGTTTTGACTGGTTTGGTATATCCAATTGTTTCTCATTGGTTTTGGTCATCCGATGGTTGGGGAAGTGCCGCTCGGTCCGACAATCTCCTTTTCGGCTCCGGAGTAATCGACTTCGCCGGCTCCGGCGTCGTTCACATGGTCGGCGGAATCGCCGGTTTATGGGGCGCCCTCATAGAAGGACCTCGAATCGGCCGGTTCGATCACGCCGGCCGGTCCGTCGCCCTGCGTGGCCACAGCGGCACACTGGTGGTTCTCGGCACTTTCCTACTCTGGTTCGGCTGGTACGGCTTCAACCCCGGTTCATTCCTCAACATCCTCAAAGCCTACGGCCACCCCGCCGCCCCTTATTACGGCCAATGGAGCGCCATCGGCCGCACCGCCGTCACCACAACCCTGGCCGGTTGCACAGCCGCACTAACCACTCTCTTCGGCAAACGGCTCCTCGTCGGGCATTGGAATGTGACCGATGTTTGCAACGGTCTATTAGGTGGATTTGCCGCCATAACCTCCGGGTGCGCGGTGGTGGATCCATGGGCAGCGATTGTTTGTGGGTTTTTCGCAGCTTGGGTATTGATTGGTTTCAACAAATTAGCGGAGAAATTGAAGTACGACGATCCATTAGAGGCGGCGCAATTACACGGGGGATGTGGGGCCTGGGGGATTTTGTTCACAGGGTTATTTGCAAAACAAGCTTACGTGAATGAGATATATCCAGGGTTGCCGGAAAGGCCGTACGGGATGCTGATGGGTGGCGGAGGGTGGTTGTTGGCCGCTCATTTGGTGCAAATTTTGTCGATTGTTGGTTGGGTTAGTGTGACAATGGGGGTTGTTTTTTGGTTGTTGCATAAGTTTGAGTTGTTGAGGATCACGGCGGAGGAGGAGATGGCCGGAATGGATTTGACGAGTCACGGTGGTTTGGCTTATGTGTATAATGATGAAGAGGAGAAGCTTTGA 1449 50.79 MAEMACSTADLHHLLGGSANATAVAEYICSRFESVSTKFVDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNSFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVSHWFWSSDGWGSAARSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGHPAAPYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFFAAWVLIGFNKLAEKLKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYPGLPERPYGMLMGGGGWLLAAHLVQILSIVGWVSVTMGVVFWLLHKFELLRITAEEEMAGMDLTSHGGLAYVYNDEEEKL 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12629376 12632219 - MELO3C012832.2.1 Cme04g00939 325200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00939 482 Gene3D Ammonium transporter AmtB like domains 26 482 IPR029020 -
Cme04g00939 482 TIGRFAM amt: ammonium transporter 47 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cme04g00939 482 PANTHER AMMONIUM TRANSPORTER 1 481 - -
Cme04g00939 482 Pfam Ammonium Transporter Family 50 473 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cme04g00939 482 SUPERFAMILY Ammonium transporter 44 454 - -
Cme04g00939 482 PANTHER AMMONIUM TRANSPORTER 1 481 - -
Cme04g00939 482 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00939 Cme-Chr4:12629376 Cme05g01065 Cme-Chr5:16335202 0 dispersed
Cme08g00972 Cme-Chr8:6390240 Cme04g00939 Cme-Chr4:12629376 3.48E-16 transposed
Cme04g00939 Cme-Chr4:12629376 Cme05g00647 Cme-Chr5:6930540 0 wgd
Cme04g00939 Cme-Chr4:12629376 Cme06g00438 Cme-Chr6:2781414 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00939 K03320 - csv:101223077 925.235