Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00944 ATGGATTTCAATACCCGTATGGGTTTTCTTCTTTTTCTCTATTTTCTTTCACTTCTTGTTCAACCAAACACTTCCACTCTTCAAACTTACATCATTCAACTCCACCCGCATGGTTTAATCACCTCTGTTTTTGATTCTAAGCTTCAATGGCACCTTTCTTTTCTTGAACAAACTCTTTCTGCCGAAGAAGACTCTTCTTCTCGCTTGCTTTACTCTTATTCTAATGCTATGGAAGGTTTTGCAGCTCAGTTAACTGAAACTGAGCTTGAGTATTTAAAGAAGTTGCCTGATGTTGTAGCTGTTAGAGAAGATAGAAAGTATCAAATTCAGACGACTTACTCTCATAAGTTCTTGGGGCTTAGTGTTGGCACACAAGGTGTCTGGCAAAAGTCCTCAATGGGCCAAGGGGCAATAGTTGGGCTTCTTGACACTGGAGTTTGGCCTGAGAGTCCAAGCTTTAGTGATTCCAAAATGCCCCCAATTCCACAAAAATGGCGAGGGGCTTGCCAAGAAGGGCAAGATTTTAATTCCTCTAATTGTAACAGGAAACTCATTGGTGCTAAGTTCTTTATCAAAGGACATCATGTGGCTTCGTCGCTGCCTTCCGATGTTGTCCAGGAGTATGTCTCCCCAAGAGACTCTCATGGTCATGGGACTCACACGTCTTCTACAGCTGCGGGTGCTTCCGTTGCTGATGCTAGCGTGTTCGGTAATGGAGCTGGTGTGGCGCAAGGGATGGCCCCAGGAGCCCACATTGCGGTGTACAAGGTTTGTTGGTTTAGTGGCTGTTATAGCTCGGATATTGTAGCAGCCATGGATTCTGCTATAAGCGATGGTGTTGACATTCTCTCCCTTTCACTTGGTGGCTTCCCGCTTCCGTTTTTCGATGATAGTATTGCCATTGGAAGTTTTCGGGCAATGCAGCATGGGATCTCAGTTGTCTGTGCAGCAGGAAACAATGGTCCAACTCAAAGCTCTGTTGCCAATGTAGCTCCTTGGATCACCACCATTGGTGCAGGCACACTTGACCGAAGATTTCCAGCTATTGTTCGACTAAGCAATGGAGAAGCCATTTACGGCGAATCAATGTACCCTGGAAACAAGTTCAAGCAAGCTACCAAGGAGCTTGAAGTGGTTTATTTGACTGGAGGGCAAATGGGAGGTGAGCTTTGCTTAAAAGGGTCTCTTCCGAGAGAAAAAGTACAAGGCAAAATGGTGGTTTGCGACCGTGGTGTCAACGGCAGATCGGAAAAGGGGCAAATTGTGAAGGAATCTGGAGGTGCTGCTATGATCCTTGCAAATTCAGAGATAAACCTAGAGGAAGACTTGGTTGATGTTCATGTTTTGCCCGCCACTTTGATTGGATTTGCAGAAGCAAATCGCTTAAAAGCTTACATTAACACCACAACCAATCCAAAAGCCAGAATCCAATTTGGAGGAACTGTGATTGGAAGATCAAGAGCTCCTTCAGTAGCTCAGTTTTCATCAAGGGGTCCAAGCCTCTCAAATCCTTCAACTCTCAAACCTGATGTAATTGCTCCTGGTGTTAACATTATAGCAGCTTGGCCTCAAAATCTTGGTCCAACTAGCCTTCCAGAAGATTCTAGAAGATCAAACTTCACTGTCATGTCAGGAACTTCCATGGCTTGTCCCCATGTCAGTGGAATTACAGCTCTAATCCATTCAGCTCATCCAAAATGGACACCTGCAGCTATCAAATCAGCCATTATGACAACTGCTGATGTTACTGATCATTTTGGTAAGCAAATTCTTGATGGCAACAAACCAGCTGATGTTTTTGCAATGGGAGCTGGTCATGTAAACCCAACAAAAGCAATTGATCCTGGTCTAGTCTATGATATCAAACCATATGAATATATCATTCATCTTTGTGCTCTTGGATATACTCATTCAGAAATCTTCATTATCACCCACATGAATGTTAGTTGCCACAAAGTTTTGCAGATGAACAAAGGCTTCACCTTGAATTATCCTTCCATGTCTGTCATTTTTAAGCATGGAACGACGAGTAAGATGGTTTCAAGACGGTTGACGAATGTTGGGAGCACAAATTCAATCTATGAAGTGAAAGTTACTGCACCTGAAGGAGTAAGAGTTCGAGTTAAGCCACGGCGCTTGGTGTTCAAACACGTGAATCAAAGCTTGAATTATAAGGTATGGTTTATGTCTGAAAAGGGAAAGGAAGGAAGAAAAGTGAGGTTTACAGAAGGGGATTTGACATGGATTCATTGTGAGAATAGCAAATACAAAGTTAGAAGCCCAATTGTAGTGACTTGGAAGAACTAA 2307 43.22 MDFNTRMGFLLFLYFLSLLVQPNTSTLQTYIIQLHPHGLITSVFDSKLQWHLSFLEQTLSAEEDSSSRLLYSYSNAMEGFAAQLTETELEYLKKLPDVVAVREDRKYQIQTTYSHKFLGLSVGTQGVWQKSSMGQGAIVGLLDTGVWPESPSFSDSKMPPIPQKWRGACQEGQDFNSSNCNRKLIGAKFFIKGHHVASSLPSDVVQEYVSPRDSHGHGTHTSSTAAGASVADASVFGNGAGVAQGMAPGAHIAVYKVCWFSGCYSSDIVAAMDSAISDGVDILSLSLGGFPLPFFDDSIAIGSFRAMQHGISVVCAAGNNGPTQSSVANVAPWITTIGAGTLDRRFPAIVRLSNGEAIYGESMYPGNKFKQATKELEVVYLTGGQMGGELCLKGSLPREKVQGKMVVCDRGVNGRSEKGQIVKESGGAAMILANSEINLEEDLVDVHVLPATLIGFAEANRLKAYINTTTNPKARIQFGGTVIGRSRAPSVAQFSSRGPSLSNPSTLKPDVIAPGVNIIAAWPQNLGPTSLPEDSRRSNFTVMSGTSMACPHVSGITALIHSAHPKWTPAAIKSAIMTTADVTDHFGKQILDGNKPADVFAMGAGHVNPTKAIDPGLVYDIKPYEYIIHLCALGYTHSEIFIITHMNVSCHKVLQMNKGFTLNYPSMSVIFKHGTTSKMVSRRLTNVGSTNSIYEVKVTAPEGVRVRVKPRRLVFKHVNQSLNYKVWFMSEKGKEGRKVRFTEGDLTWIHCENSKYKVRSPIVVTWKN 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12697460 12699964 - MELO3C012837.2.1 Cme04g00944 325205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00944 768 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 24 765 IPR045051 -
Cme04g00944 768 CDD PA_subtilisin_like 350 476 - -
Cme04g00944 768 ProSiteProfiles Serine proteases, subtilase domain profile. 112 613 - -
Cme04g00944 768 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 110 IPR037045 -
Cme04g00944 768 PRINTS Subtilisin serine protease family (S8) signature 134 153 IPR015500 -
Cme04g00944 768 PRINTS Subtilisin serine protease family (S8) signature 213 226 IPR015500 -
Cme04g00944 768 PRINTS Subtilisin serine protease family (S8) signature 544 560 IPR015500 -
Cme04g00944 768 SUPERFAMILY Subtilisin-like 110 617 IPR036852 GO:0004252|GO:0006508
Cme04g00944 768 Pfam Fibronectin type-III domain 662 764 IPR041469 -
Cme04g00944 768 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.2 24 765 - -
Cme04g00944 768 CDD Peptidases_S8_3 107 581 IPR034197 -
Cme04g00944 768 ProSitePatterns Serine proteases, subtilase family, serine active site. 545 555 IPR023828 -
Cme04g00944 768 Gene3D - 630 766 - -
Cme04g00944 768 Gene3D - 343 483 - -
Cme04g00944 768 Pfam Subtilase family 134 588 IPR000209 GO:0006508|GO:0008236
Cme04g00944 768 Pfam PA domain 397 462 IPR003137 -
Cme04g00944 768 Gene3D Peptidase S8/S53 domain 137 626 IPR036852 GO:0004252|GO:0006508
Cme04g00944 768 SUPERFAMILY Protease propeptides/inhibitors 52 109 - -
Cme04g00944 768 Pfam Peptidase inhibitor I9 29 109 IPR010259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00944 - - - csv:101222839 1511.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00944 Cme-Chr4:12697460 Cme10g01524 Cme-Chr10:19274980 0 dispersed
Cme04g00944 Cme-Chr4:12697460 Cme02g00307 Cme-Chr2:2555800 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g01524 . 22 764 Subtilisin-like Serine Gene Family AT1G01900 57.6 4.7e-232 801.2
Cme10g01523 . 8 681 Subtilisin-like Serine Gene Family AT1G01900 57.0 1.8e-215 746.1
Cme04g00944 . 9 767 Subtilisin-like Serine Gene Family AT1G04110 67.4 1.2e-309 1058.9
Cme04g00451 . 30 338 Subtilisin-like Serine Gene Family AT1G20150 56.1 1.6e-91 334.3
Cme04g00451 . 6 376 Subtilisin-like Serine Gene Family AT1G20160 58.6 8.2e-114 407.9
Cme08g00050 . 9 852 Subtilisin-like Serine Gene Family AT1G30600 62.1 7.4e-300 1026.5
Cme07g01634 . 58 757 Subtilisin-like Serine Gene Family AT1G32940 50.8 1.9e-190 662.9
Cme07g01634 . 58 757 Subtilisin-like Serine Gene Family AT1G32950 50.3 3.5e-189 658.7
Cme07g01634 . 29 757 Subtilisin-like Serine Gene Family AT1G32960 50.7 3.0e-202 702.2
Cme12g00903 . 51 672 Subtilisin-like Serine Gene Family AT1G62340 57.1 9.3e-202 700.7
Cme01g00577 . 11 772 Subtilisin-like Serine Gene Family AT2G04160 64.3 2.1e-285 978.4
Cme06g02720 . 7 746 Subtilisin-like Serine Gene Family AT2G04160 58.3 3.7e-261 897.9
Cme06g02716 . 28 770 Subtilisin-like Serine Gene Family AT2G04160 57.9 3.2e-249 858.2
Cme12g00800 . 11 771 Subtilisin-like Serine Gene Family AT2G04160 53.7 1.5e-230 796.2
Cme06g02719 . 2 700 Subtilisin-like Serine Gene Family AT2G04160 54.8 8.5e-226 780.4
Cme12g00798 . 11 751 Subtilisin-like Serine Gene Family AT2G04160 51.6 1.1e-217 753.4
Cme06g02725 . 2 675 Subtilisin-like Serine Gene Family AT2G04160 55.3 9.4e-217 750.4
Cme02g00307 . 25 764 Subtilisin-like Serine Gene Family AT2G05920 72.9 0.0e+00 1089.3
Cme08g00624 . 25 760 Subtilisin-like Serine Gene Family AT2G05920 55.8 8.3e-234 807.0
Cme03g02092 . 34 769 Subtilisin-like Serine Gene Family AT2G05920 54.8 2.2e-218 755.7
Cme06g00938 . 26 771 Subtilisin-like Serine Gene Family AT2G05920 51.5 1.3e-215 746.5
Cme01g02803 . 30 762 Subtilisin-like Serine Gene Family AT2G05920 53.3 2.1e-213 739.2
Cme11g00387 CCT,ECH 30 763 Subtilisin-like Serine Gene Family AT2G05920 50.7 3.9e-207 718.4
Cme01g02767 . 26 768 Subtilisin-like Serine Gene Family AT2G05920 51.9 6.9e-204 707.6
Cme10g01523 . 34 676 Subtilisin-like Serine Gene Family AT2G05920 52.2 3.2e-177 619.0
Cme05g01295 CCT 21 816 Subtilisin-like Serine Gene Family AT2G19170 82.4 0.0e+00 1346.6
Cme01g02803 . 8 770 Subtilisin-like Serine Gene Family AT3G14067 63.8 6.9e-284 973.4
Cme08g00624 . 9 760 Subtilisin-like Serine Gene Family AT3G14067 54.2 2.5e-225 778.9
Cme02g00307 . 7 762 Subtilisin-like Serine Gene Family AT3G14067 52.5 2.5e-217 752.3
Cme03g02092 . 20 769 Subtilisin-like Serine Gene Family AT3G14067 50.1 4.0e-207 718.4
Cme01g02767 . 8 774 Subtilisin-like Serine Gene Family AT3G14067 50.8 2.9e-205 712.2
Cme10g01523 . 8 682 Subtilisin-like Serine Gene Family AT3G14067 50.1 3.3e-177 619.0
Cme01g02767 . 29 776 Subtilisin-like Serine Gene Family AT3G14240 77.5 0.0e+00 1204.5
Cme11g00387 CCT,ECH 31 771 Subtilisin-like Serine Gene Family AT3G14240 58.2 4.8e-245 844.3
Cme08g00624 . 27 756 Subtilisin-like Serine Gene Family AT3G14240 52.7 2.5e-217 752.3
Cme06g00938 . 27 767 Subtilisin-like Serine Gene Family AT3G14240 50.5 1.7e-213 739.6
Cme02g00307 . 28 758 Subtilisin-like Serine Gene Family AT3G14240 51.8 1.7e-210 729.6
Cme01g02803 . 33 763 Subtilisin-like Serine Gene Family AT3G14240 51.1 1.1e-207 720.3
Cme10g01523 . 8 679 Subtilisin-like Serine Gene Family AT3G14240 51.7 2.5e-185 646.0
Cme10g01530 . 28 568 Subtilisin-like Serine Gene Family AT4G00230 62.1 8.7e-194 673.7
Cme10g01527 . 76 599 Subtilisin-like Serine Gene Family AT4G00230 60.5 3.1e-183 638.6
Cme08g01214 CCT 1 537 Subtilisin-like Serine Gene Family AT4G00230 50.8 3.1e-143 505.8
Cme04g02414 CCT 2 498 Subtilisin-like Serine Gene Family AT4G00230 51.2 3.0e-138 489.2
Cme07g01634 . 34 757 Subtilisin-like Serine Gene Family AT4G10520 52.0 4.2e-201 698.4
Cme07g01634 . 34 757 Subtilisin-like Serine Gene Family AT4G10530 50.2 3.6e-189 658.7
Cme07g01634 . 34 757 Subtilisin-like Serine Gene Family AT4G10540 50.3 3.2e-204 708.8
Cme08g00050 . 12 852 Subtilisin-like Serine Gene Family AT4G20430 64.1 0.0e+00 1077.4
Cme12g01441 . 1 284 Subtilisin-like Serine Gene Family AT4G21320 77.9 7.7e-132 466.8
Cme12g00600 . 62 786 Subtilisin-like Serine Gene Family AT4G26330 56.4 1.8e-233 805.8
Cme05g01295 CCT 9 816 Subtilisin-like Serine Gene Family AT4G30020 81.5 0.0e+00 1337.8
Cme11g00387 CCT,ECH 30 771 Subtilisin-like Serine Gene Family AT4G34980 74.7 0.0e+00 1143.6
Cme01g02767 . 16 776 Subtilisin-like Serine Gene Family AT4G34980 54.2 1.3e-231 799.7
Cme08g00624 . 7 756 Subtilisin-like Serine Gene Family AT4G34980 51.2 1.0e-210 730.3
Cme02g00307 . 12 758 Subtilisin-like Serine Gene Family AT4G34980 50.3 1.7e-205 713.0
Cme08g01214 CCT 14 528 Subtilisin-like Serine Gene Family AT5G03620 59.6 2.3e-175 612.5
Cme04g02414 CCT 2 498 Subtilisin-like Serine Gene Family AT5G03620 59.9 1.0e-170 597.0
Cme10g01530 . 5 568 Subtilisin-like Serine Gene Family AT5G03620 51.2 3.5e-147 518.8
Cme10g00976 . 3 506 Subtilisin-like Serine Gene Family AT5G03620 51.1 9.4e-137 484.2
Cme10g01527 . 61 597 Subtilisin-like Serine Gene Family AT5G03620 50.7 1.8e-135 479.9
Cme10g00974 . 7 492 Subtilisin-like Serine Gene Family AT5G03620 50.7 6.1e-128 454.9
Cme02g01368 . 285 1043 Subtilisin-like Serine Gene Family AT5G19660 79.8 0.0e+00 1276.9
Cme08g00050 . 34 626 Subtilisin-like Serine Gene Family AT5G44530 65.4 6.6e-229 790.4
Cme08g00188 . 21 728 Subtilisin-like Serine Gene Family AT5G45640 51.4 9.9e-195 677.2
Cme08g00188 . 3 728 Subtilisin-like Serine Gene Family AT5G45650 56.9 2.3e-234 808.9
Cme06g00938 . 11 769 Subtilisin-like Serine Gene Family AT5G51750 72.2 0.0e+00 1154.4
Cme08g00624 . 25 760 Subtilisin-like Serine Gene Family AT5G51750 53.1 1.1e-231 800.0
Cme02g00307 . 10 762 Subtilisin-like Serine Gene Family AT5G51750 51.2 3.4e-222 768.5
Cme03g02092 . 12 769 Subtilisin-like Serine Gene Family AT5G51750 50.9 2.9e-221 765.4
Cme10g00974 . 6 492 Subtilisin-like Serine Gene Family AT5G59090 50.3 4.6e-128 455.7
Cme10g00162 . 37 733 Subtilisin-like Serine Gene Family AT5G59190 50.7 3.6e-191 665.2
Cme10g00974 . 2 492 Subtilisin-like Serine Gene Family AT5G59190 51.4 1.1e-136 484.2
Cme01g00577 . 1 772 Subtilisin-like Serine Gene Family AT5G59810 58.9 1.4e-263 906.0
Cme12g00800 . 5 772 Subtilisin-like Serine Gene Family AT5G59810 60.1 2.0e-262 902.1
Cme06g02720 . 4 748 Subtilisin-like Serine Gene Family AT5G59810 60.4 5.0e-258 887.5
Cme12g00798 . 15 752 Subtilisin-like Serine Gene Family AT5G59810 57.7 3.1e-244 841.6
Cme06g02716 . 764 1510 Subtilisin-like Serine Gene Family AT5G59810 55.3 1.9e-233 805.8
Cme06g02719 . 2 700 Subtilisin-like Serine Gene Family AT5G59810 55.3 1.6e-219 759.6
Cme06g02725 . 1 675 Subtilisin-like Serine Gene Family AT5G59810 55.8 3.2e-212 735.3
Cme08g00624 . 8 761 Subtilisin-like Serine Gene Family AT5G67360 72.6 0.0e+00 1107.8
Cme03g02092 . 36 770 Subtilisin-like Serine Gene Family AT5G67360 66.1 1.8e-289 991.9
Cme02g00307 . 28 763 Subtilisin-like Serine Gene Family AT5G67360 57.0 2.6e-235 812.0
Cme06g00938 . 27 768 Subtilisin-like Serine Gene Family AT5G67360 54.0 6.4e-226 780.8
Cme01g02803 . 8 762 Subtilisin-like Serine Gene Family AT5G67360 54.5 2.6e-219 758.8
Cme01g02767 . 7 771 Subtilisin-like Serine Gene Family AT5G67360 51.9 3.1e-212 735.3
Cme11g00387 CCT,ECH 24 766 Subtilisin-like Serine Gene Family AT5G67360 51.9 4.2e-209 724.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009243 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00944 Cme_Chr04 FPKM 54.92408 62.090092 22.441191 24.710291 20.214119 19.407564 24.342211 0.0 0.131272 0.134285