Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00945 ATGCCGAAAAAGAGGATGAAATCGATAACCCAGATTTTGTTTTGTGTGTTTCTATACTGTTGTATTGGTTTTTACACTCACTGTTCTGCTTCTGGGTTTAGTGAGGAAGCTTTGGCTTTGGTTTCGATTAAATCGGGGCTTGTTGATCCATTGAAATGGCTCAGAGATTGGAAGTTGGGCGATGGAAATGACAAGTTTGCAAAGCATTGTAATTGGACTGGAGTTCTGTGCAACTCAGAAGGAGCTGTTGAGAAACTAAGCCTTTCTCGTATGAATCTCAGCGGCATTTTGTCCAACGACTTACAGAAATTAACAAAGCTTACTTCTCTTGACTTGAGCTGCAATGGGTTTTCATCTTCTTTGCCAAAATCTATTAGCAATCTCACTTCCTTGAAGAGTTTTGATGTGAGTCAAAACTATTTCGTCGGTGAAATTCCTGTGGGGTTTGGGGGAGTGGTTGGATTGACGAATTTCAATGCTTCAAGCAACAATTTCTCTGGTTTAATCCCTGAAGATCTTGGAAATGCAACTTTAATGGAGATTTTGGATCTTCGGGGGAGTTTTCTTGAAGGGCCAATTCCTATATCTTTCAAGAACTTGCAGAAGTTGAAGTTTCTTGGACTTTCTGGGAACAATCTGACCGGTCGAATCCCGGCCGAGATCGGTCAGATGTCATCGTTAGAGACTGTTATTATTGGATACAATGAATTTGAAGGAGGGATTCCATCAGAATTTGGAAATCTCACTAATCTGAAGTATCTTGATTTGGCTGTGGGTAATCTTGGTGGTGGGATTCCTACTGAGCTTGGGAGGCTTAAAGAACTTGAGACTTTGTTCCTTTATAAGAACCAATTCGAAGATCGAATTCCATCATCGATTGGCAATGCTACTTCATTAGTCTTTCTTGATCTTTCAGACAACAAGTTAACAGGGGAGATTCCAGCTGAGGTTGCTGAATTGAAGAACTTGCAGCTGCTGAATTTGATGTGCAACAAGCTATCTGGTGAAGTGCCTCCTGGAATTGGAGGGCTGACAAAATTGCAGGTTCTAGAGCTTTGGAACAACTCTTTTTCGGGCCAATTGCCTGCCGATCTCGGCAAGAACTCGGAGTTGGTATGGTTGGATGTTTCATCCAATTCCTTCTCTGGTCCAATTCCTGCTTCTTTATGTAATAGAAGCAATCTAACCAAGCTCATCCTCTTCAACAATGCCTTTTCGGGTTCGATTCCAATTGGATTGTCATCGTGTTACTCGCTCGTTCGTGTTCGAATGCAGAACAATCTGCTATCTGGTACGATTCCAGTTGGTTTTGGAAAGCTTGGGAAACTCCAGAGGCTAGAATTAGCCAACAACAGTCTTTTTGGTAGTATCCCAAGTGATATTTCATCTTCCACGTCCCTTTCTTTTATCGATCTCTCTGAAAATGACCTCCATTCTTCTCTTCCTCCCTCAATTCTCTCCATTCCGAATCTTCAAACTTTTATAGTCTCTGACAATAACTTAGAAGGTGAAATTCCAGATCAATTTCAGGAATGTCCTGCACTTTCCCTTCTTGATCTATCTTCAAACCATTTCACAGGAAGCATTCCAGAAAGCATTGCTTCATGTGAGAGACTGGTAAATCTGAATCTTAGAAACAATAAGTTAACCGGAGAAATCCCAAAACAGATTGCAAATATGCCTTCATTGTCCGTCCTGGATCTATCAAATAACTCTCTTACTGGTAGAATACCCGATAATTTCGGTATATCTCCTGCACTTGAATCGCTTAATGTGTCATACAATAAGCTTGAGGGTCCAGTGCCATTAAATGGTGTGTTAAGAACAATCAATCCGAGTGATCTTCAAGGTAATGCTGGTCTATGTGGAGCTGTCCTACCTCCATGTTCACCAAATTTAGCATATACATCAGGGCACGGGAACTCGCACACGTCACACATTATCACCGGTTGGGTCATTGGAATATCTGGATTGTTAGCAATCTGTATCACTCTTTTCGCTGTTCGATCGCTGTACAAGAGATGGTACTCAAGTGGAAGTTGTTTTGAAGGGAGATATGAAATGGGTGGTGGAGATTGGCCATGGAGATTGATGGCGTTCCAAAGGCTTGGATTCACAAGCAGTGACATTTTGACTTGCATCAAGGAATCAAATGTAATTGGAATGGGAGCAACTGGGATTGTGTATAAAGCTGAAATGCCACAACTAAAGACAATTGTGGCAGTTAAAAAGCTGTGGAGATCACAACCAGATCTTGAAATTGGAAGTTGTGAAGGTTTAGTAGGAGAAGTGAATTTGCTGGGGAAGTTAAGGCACAGGAACATAGTTCGCTTACTTGGATTCATGCACAACGATGTCGATGTCATGATCATCTATGAGTTTATGCAAAATGGGAGCCTTGGAGAAGCCTTACATGGAAAACAAGCAGGGAGGCTGCTTGTAGACTGGGTTTCAAGATACAACATAGCGATTGGAGTTGCGCAAGGTTTAGCTTATCTCCATCACGATTGCAACCCACCCATCATACATCGTGACGTTAAGCCAAATAATATACTTCTTGATTCAAATCTCGAAGCACGGTTAGCTGATTTCGGTTTGGCACGGATGATGGCTCGAAAGAACGAGACGGTTTCAATGGTAGCTGGATCCTATGGATACATTGCCCCTGAATATGGATACACTTTAAAGGTGGATGAAAAGATTGACATTTACAGCTACGGCGTTGTTCTTCTAGAGCTACTAACAGGGAAGAAACCATTAGATCCCGAGTTCGGAGAATCTGTGGACATTGTTGAATGGATAAAAAGGAAAGTTAGAGACAATAGGCCTTTAGAAGAAGCATTAGATCCCAATCTGGGGAACTTCAAGCATGTTCAAGAAGAAATGCTGTTTGTTCTTAGAATAGCACTTCTCTGCACAGCAAAGCATCCAAAAGACAGACCTTCCATGAGAGATATAATAACAATGCTTGGAGAAGCAAAACCAAGGAGAAAAAGCAACAGTGGGAATGAAGGATTTGGAACTAACAAAGAGAAGCCAGTTTTCAGCACTTCACCTGTAAATGGCCTTCTTTAG 3075 41.59 MPKKRMKSITQILFCVFLYCCIGFYTHCSASGFSEEALALVSIKSGLVDPLKWLRDWKLGDGNDKFAKHCNWTGVLCNSEGAVEKLSLSRMNLSGILSNDLQKLTKLTSLDLSCNGFSSSLPKSISNLTSLKSFDVSQNYFVGEIPVGFGGVVGLTNFNASSNNFSGLIPEDLGNATLMEILDLRGSFLEGPIPISFKNLQKLKFLGLSGNNLTGRIPAEIGQMSSLETVIIGYNEFEGGIPSEFGNLTNLKYLDLAVGNLGGGIPTELGRLKELETLFLYKNQFEDRIPSSIGNATSLVFLDLSDNKLTGEIPAEVAELKNLQLLNLMCNKLSGEVPPGIGGLTKLQVLELWNNSFSGQLPADLGKNSELVWLDVSSNSFSGPIPASLCNRSNLTKLILFNNAFSGSIPIGLSSCYSLVRVRMQNNLLSGTIPVGFGKLGKLQRLELANNSLFGSIPSDISSSTSLSFIDLSENDLHSSLPPSILSIPNLQTFIVSDNNLEGEIPDQFQECPALSLLDLSSNHFTGSIPESIASCERLVNLNLRNNKLTGEIPKQIANMPSLSVLDLSNNSLTGRIPDNFGISPALESLNVSYNKLEGPVPLNGVLRTINPSDLQGNAGLCGAVLPPCSPNLAYTSGHGNSHTSHIITGWVIGISGLLAICITLFAVRSLYKRWYSSGSCFEGRYEMGGGDWPWRLMAFQRLGFTSSDILTCIKESNVIGMGATGIVYKAEMPQLKTIVAVKKLWRSQPDLEIGSCEGLVGEVNLLGKLRHRNIVRLLGFMHNDVDVMIIYEFMQNGSLGEALHGKQAGRLLVDWVSRYNIAIGVAQGLAYLHHDCNPPIIHRDVKPNNILLDSNLEARLADFGLARMMARKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKKPLDPEFGESVDIVEWIKRKVRDNRPLEEALDPNLGNFKHVQEEMLFVLRIALLCTAKHPKDRPSMRDIITMLGEAKPRRKSNSGNEGFGTNKEKPVFSTSPVNGLL 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12717183 12720627 + MELO3C012838.2.1 Cme04g00945 325206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00945 1024 MobiDBLite consensus disorder prediction 1001 1024 - -
Cme04g00945 1024 MobiDBLite consensus disorder prediction 991 1024 - -
Cme04g00945 1024 Gene3D Ribonuclease Inhibitor 32 183 IPR032675 -
Cme04g00945 1024 Gene3D Ribonuclease Inhibitor 184 262 IPR032675 -
Cme04g00945 1024 SMART serkin_6 714 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00945 1024 Pfam Protein kinase domain 716 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00945 1024 SUPERFAMILY RNI-like 313 599 - -
Cme04g00945 1024 SUPERFAMILY Protein kinase-like (PK-like) 711 990 IPR011009 -
Cme04g00945 1024 PRINTS Leucine-rich repeat signature 299 312 - -
Cme04g00945 1024 PRINTS Leucine-rich repeat signature 560 573 - -
Cme04g00945 1024 Gene3D Phosphorylase Kinase; domain 1 713 798 - -
Cme04g00945 1024 Gene3D Ribonuclease Inhibitor 263 364 IPR032675 -
Cme04g00945 1024 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 1004 - -
Cme04g00945 1024 ProSitePatterns Protein kinases ATP-binding region signature. 720 744 IPR017441 GO:0005524
Cme04g00945 1024 Gene3D Ribonuclease Inhibitor 374 633 IPR032675 -
Cme04g00945 1024 SUPERFAMILY L domain-like 70 359 - -
Cme04g00945 1024 ProSiteProfiles Protein kinase domain profile. 714 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00945 1024 Pfam Leucine Rich repeat 104 118 IPR001611 GO:0005515
Cme04g00945 1024 Pfam Leucine rich repeat 538 597 IPR001611 GO:0005515
Cme04g00945 1024 SMART LRR_typ_2 320 343 IPR003591 -
Cme04g00945 1024 SMART LRR_typ_2 200 224 IPR003591 -
Cme04g00945 1024 SMART LRR_typ_2 440 464 IPR003591 -
Cme04g00945 1024 SMART LRR_typ_2 272 296 IPR003591 -
Cme04g00945 1024 SMART LRR_typ_2 344 368 IPR003591 -
Cme04g00945 1024 SMART LRR_typ_2 560 584 IPR003591 -
Cme04g00945 1024 SMART LRR_typ_2 104 128 IPR003591 -
Cme04g00945 1024 Gene3D Transferase(Phosphotransferase) domain 1 799 1011 - -
Cme04g00945 1024 Pfam Leucine rich repeat N-terminal domain 35 78 IPR013210 -
Cme04g00945 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Cme04g00945 1024 PANTHER UNNAMED PRODUCT 15 1004 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02029 Cme-Chr2:26403848 Cme04g00945 Cme-Chr4:12717183 2.56E-07 dispersed
Cme04g00183 Cme-Chr4:1371811 Cme04g00945 Cme-Chr4:12717183 6.16E-149 dispersed
Cme04g00945 Cme-Chr4:12717183 Cme07g01827 Cme-Chr7:23749651 0 dispersed
Cme07g01698 Cme-Chr7:22537336 Cme04g00945 Cme-Chr4:12717183 5.58E-12 dispersed
Cme08g00690 Cme-Chr8:4565155 Cme04g00945 Cme-Chr4:12717183 3.68E-30 dispersed
Cme08g01673 Cme-Chr8:18402399 Cme04g00945 Cme-Chr4:12717183 8.27E-27 dispersed
Cme04g00945 Cme-Chr4:12717183 Cme06g00412 Cme-Chr6:2644766 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64802 PF00069 Pkinase 2.20E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00945 - - csv:101222597 1951.41