Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00983 ATGAAGAGTGACGTTAAGATTAAGAGGGGGAGGAGCACTGGAAAAGGGAAGAATATAAGGAAGATAATGAAGTGTTTATGTTCTGGTGAGAAAAAAGCTGGAGATAATATGATTCCAGCATCACCTTCGGCTTTCGAGAATTCAGGAAGTGGACGCTCTTCACGGACTGGTGAGATCATCAACAAGCCAGAAATTGGCAATATAGAAGAAGCTGAGTCTTCTCTTCGCGAGAGTGGTTGTTTGAATTATGAGGAAGCAAGAGCATTGCTGGGAAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATCACTGCTATAACTAGTAAGATAATGATCTCCATAGCTAGGAGAGGAGATCGTCCACGGAAACGATCACAAAATTTTACTGCCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCCTTCTCAAAGCAAAATCATTGGAAGGACTTGGGAGGTTCGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCCAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCTGTGGAGCTGCTACCCGAGTTATGGAAGCTAGCTGATGCTTCTCAAGAAGCGATCCTTTCATACCGGCGAGCACTTCTTCATCAGTGGAACCTTGATGTGGGAATCACTGCTCGTATTCAGAAAGAGTTCGCCATTTTTCTTCTGCATAGTGGAAGTGAAGCTTGCCCTCCGAATCTCCGGTCCCAAATGGACAGCTCATTTGTACCGAAAAACAATATTGAAGAAGCTATTCTCTTACTTATGATACTACTTAGAAAAGTTGTTCTTAAAAGGATTGATTGGGATCCATCAATCTTGGATCATCTCTCTTTTGCTTTAATAATATCAGGGGATACAAGGGCTTTAGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACATCGACAAGAACTGTATCATGCTTTAGCTCTTTGTTATTATGGTGCAGGTGAAAACTTGACTGCTTTGAATCTGTTGAGAAAACTGTTGGGTAGTCATGAGGATCCTAAATCGCTTCCAGCTTTATTGATGGCGTCAAAGATTTGTGGAGAGAACTGTGACCTCGCTGAAGAGGGAACGAGTTTTGCTCATAGAGCTCTTCAAAACTTGGATCATGAATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTGTCTCACTGTCTGTATATTCTAAATCTGCCACTGCAGATTCTGAGAAGTTTACTAGACAATCTGAGGCGATAGAAGCCTTGGAAGCTGCACGGAAGAAGACTCGAATGACTGACCCTAATGTTCTCTATCATTTGAGCCTTGAATATGCCAACGAGAGGAAGTTAGATTCAGCACTTCATTATGCAAAAAAGTGTCTCAAGCTAGAAGGTGGATCTAATATTAGAACTTGGTTACTACTGGCTAGGATTCTCTCTGCCCAAAAACGATATACAGATAGCAAAAGCATTATAAATGCAGCTCTGGATCAGACAGGGAAATGGGATCAAGCCGAGTTGCTTCAAACAAAAGCAAAGATTTTAATTGCACAGGATGAGTTTAAAGGTGCTATTGAGACTTATAGTCAATTACTCGCTTTTTTTCAAGTTCAGAGTAAAAGTTTCAATTTGGGAGATAAGAAGCTACTAAAGAGCAGCAGAAATTATGCTGGAAGATTACAACTGGAAGTGTGGCATGATCTAGCTCTCGTCTACATAAGGCTCTCACAGTGGCACGACGCCGAGGCATGCCTATCAAAGTCAAAGGCCATCTCTTCTTATTCGGCGTCTAGATGTCATATCACAGGTATGCTTTATGAAGCAAAAGGGTTGTATAAAGAAGCTCTCAACGGTTTTATGGCTGCTCTGGAGATTGATCCGATTCATGTCCCTAGCTTGGTGTCGTCGGCGGTGGTAATCAGACATCTGGGCCACCAATCGCATCCCGTCATTCGCAGTTTTTTGATGGATGCTCTACGGCTGGACCAGACGAACCACAGTGCGTGGTACAATCTTGGCCTTTTCTACAAATCTGAAGGAACCAAATCTTCATTAGGAGAAGCTGTCGAATGTTTTGAGGCTGCAACTTTCCTTGAAGAGTCTGCGCCTGTTGAGCCCTTTAGATAA 2199 42.29 MKSDVKIKRGRSTGKGKNIRKIMKCLCSGEKKAGDNMIPASPSAFENSGSGRSSRTGEIINKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAITSKIMISIARRGDRPRKRSQNFTAPPMSMHAVSLLLEAILLKAKSLEGLGRFGEAAQSCKVILDILESSFPQGLPENFGADCKLQETVTKAVELLPELWKLADASQEAILSYRRALLHQWNLDVGITARIQKEFAIFLLHSGSEACPPNLRSQMDSSFVPKNNIEEAILLLMILLRKVVLKRIDWDPSILDHLSFALIISGDTRALAGQIEELPPGILHRQELYHALALCYYGAGENLTALNLLRKLLGSHEDPKSLPALLMASKICGENCDLAEEGTSFAHRALQNLDHECDQLEGVANCLLGVSLSVYSKSATADSEKFTRQSEAIEALEAARKKTRMTDPNVLYHLSLEYANERKLDSALHYAKKCLKLEGGSNIRTWLLLARILSAQKRYTDSKSIINAALDQTGKWDQAELLQTKAKILIAQDEFKGAIETYSQLLAFFQVQSKSFNLGDKKLLKSSRNYAGRLQLEVWHDLALVYIRLSQWHDAEACLSKSKAISSYSASRCHITGMLYEAKGLYKEALNGFMAALEIDPIHVPSLVSSAVVIRHLGHQSHPVIRSFLMDALRLDQTNHSAWYNLGLFYKSEGTKSSLGEAVECFEAATFLEESAPVEPFR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13315816 13320143 - MELO3C012866.2.1 Cme04g00983 325244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00983 732 Pfam Tetratricopeptide repeat 626 652 IPR019734 GO:0005515
Cme04g00983 732 Pfam Tetratricopeptide repeat 460 488 IPR019734 GO:0005515
Cme04g00983 732 Gene3D Tetratricopeptide repeat domain 585 727 IPR011990 GO:0005515
Cme04g00983 732 PANTHER PROTEIN NPG1 13 732 IPR043376 -
Cme04g00983 732 MobiDBLite consensus disorder prediction 37 63 - -
Cme04g00983 732 Gene3D Tetratricopeptide repeat domain 64 581 IPR011990 GO:0005515
Cme04g00983 732 MobiDBLite consensus disorder prediction 41 57 - -
Cme04g00983 732 PANTHER PROTEIN NPGR2 13 732 - -
Cme04g00983 732 SUPERFAMILY TPR-like 439 558 IPR011990 GO:0005515
Cme04g00983 732 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Cme04g00983 732 SMART tpr_5 458 491 IPR019734 GO:0005515
Cme04g00983 732 SMART tpr_5 586 619 IPR019734 GO:0005515
Cme04g00983 732 SMART tpr_5 690 726 IPR019734 GO:0005515
Cme04g00983 732 SMART tpr_5 493 526 IPR019734 GO:0005515
Cme04g00983 732 SMART tpr_5 620 653 IPR019734 GO:0005515
Cme04g00983 732 SMART tpr_5 529 562 IPR019734 GO:0005515
Cme04g00983 732 SMART tpr_5 151 184 IPR019734 GO:0005515
Cme04g00983 732 SUPERFAMILY TPR-like 527 704 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02105 Cme-Chr3:28338587 Cme04g00983 Cme-Chr4:13315816 0 transposed
Cme07g00669 Cme-Chr7:5719008 Cme04g00983 Cme-Chr4:13315816 0 transposed
Cme04g00983 Cme-Chr4:13315816 Cme06g00471 Cme-Chr6:2967349 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00983 K21843 - csv:101223229 1358.97